- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 2 x ETA: ETHANOLAMINE(Non-covalent)
- 5 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 7 residues within 4Å:- Chain A: G.272, A.273, I.278, G.280, E.281, N.282, C.283
1 PLIP interactions:1 interactions with chain A- Water bridges: A:A.273
GOL.3: 2 residues within 4Å:- Chain A: N.81, K.115
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.115
- Water bridges: A:N.81, A:N.81
GOL.4: 4 residues within 4Å:- Chain A: R.114, K.145, R.316, G.356
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:K.145, A:K.145, A:G.356
- Water bridges: A:R.114, A:D.319
GOL.8: 4 residues within 4Å:- Chain C: R.114, K.145, R.316, G.356
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:K.145, C:R.316
- Water bridges: C:R.114, C:I.144, C:K.145, C:R.316
GOL.9: 3 residues within 4Å:- Chain C: R.60, N.61, E.82
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:N.61, C:N.61
- Water bridges: C:E.82, C:Y.85
- 2 x B12: COBALAMIN(Non-covalent)
B12.5: 32 residues within 4Å:- Chain A: N.193, P.194, V.195, L.225, A.226, H.227, F.245, Q.246, S.247, E.257, F.258, S.295, F.329, I.330, M.401, L.402, N.403
- Chain B: Y.144, R.152, L.180, R.217, V.218, K.219, G.238, E.239, R.240, Y.252, E.264, A.265, R.267, C.269, S.271
40 PLIP interactions:24 interactions with chain B, 15 interactions with chain A, 1 Ligand-Ligand interactions- Hydrophobic interactions: B:L.180, B:Y.252, B:E.264, B:R.267, A:F.258, A:F.258, A:F.329, A:F.329, A:F.329
- Hydrogen bonds: B:V.218, B:K.219, B:K.219, B:E.239, B:R.240, B:Y.252, B:Y.252, B:C.269, A:P.194, A:L.225, A:Q.246, A:S.247, A:E.257, A:S.295, A:S.295
- Water bridges: B:R.152, B:R.152, B:R.152, B:R.152, B:R.217, B:R.217, B:R.240, B:C.269, B:C.269, B:S.271, B:S.271, A:N.193, A:E.257, A:Y.334
- Salt bridges: B:R.217
- Metal complexes: B12.5
B12.10: 29 residues within 4Å:- Chain C: N.193, P.194, L.225, A.226, H.227, F.245, Q.246, S.247, E.257, F.258, S.295, F.329, I.330, M.401, L.402
- Chain D: Y.144, R.152, L.180, R.217, V.218, G.238, E.239, R.240, Y.252, E.264, R.267, C.269, S.271, N.272
36 PLIP interactions:21 interactions with chain D, 14 interactions with chain C, 1 Ligand-Ligand interactions- Hydrophobic interactions: D:L.180, D:Y.252, D:E.264, D:R.267, C:F.258, C:F.258, C:F.329, C:F.329, C:F.329, C:I.330
- Hydrogen bonds: D:R.152, D:R.152, D:V.218, D:E.239, D:R.240, D:Y.252, D:C.269, D:N.272, C:P.194, C:A.226, C:Q.246, C:S.247, C:E.257, C:S.295, C:S.295
- Water bridges: D:R.217, D:R.217, D:R.240, D:C.269, D:C.269, D:S.271, D:S.271, D:S.271, C:N.193
- Salt bridges: D:R.217
- Metal complexes: B12.10
- 2 x NA: SODIUM ION(Non-functional Binders)
NA.7: 5 residues within 4Å:- Chain A: R.339
- Chain C: D.338, D.372, N.374, L.375
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:D.372, C:L.375
- Water bridges: C:N.374, C:N.378
NA.11: 4 residues within 4Å:- Chain C: E.179, H.410
- Chain D: R.88, T.91
3 PLIP interactions:2 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:T.91, D:T.91
- Water bridges: C:H.410
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shibata, N. et al., Crystal structures of ethanolamine ammonia-lyase complexed with coenzyme B12 analogs and substrates. J.Biol.Chem. (2010)
- Release Date
- 2010-06-02
- Peptides
- Ethanolamine ammonia-lyase heavy chain: AC
Ethanolamine ammonia-lyase light chain: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CB
BD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 2 x ETA: ETHANOLAMINE(Non-covalent)
- 5 x GOL: GLYCEROL(Non-functional Binders)
- 2 x B12: COBALAMIN(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shibata, N. et al., Crystal structures of ethanolamine ammonia-lyase complexed with coenzyme B12 analogs and substrates. J.Biol.Chem. (2010)
- Release Date
- 2010-06-02
- Peptides
- Ethanolamine ammonia-lyase heavy chain: AC
Ethanolamine ammonia-lyase light chain: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CB
BD
D