- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- hetero-6-6-mer
- Ligands
- 6 x 2A1: (2S)-2-aminopropan-1-ol(Non-covalent)
- 24 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 9 residues within 4Å:- Chain A: G.272, A.273, I.278, G.280, E.281, N.282, C.283
- Chain G: N.81, K.115
Ligand excluded by PLIPGOL.3: 8 residues within 4Å:- Chain A: K.115
- Chain G: G.272, A.273, I.278, G.280, E.281, N.282, C.283
Ligand excluded by PLIPGOL.4: 5 residues within 4Å:- Chain A: R.114, V.143, K.145, R.316, G.356
Ligand excluded by PLIPGOL.5: 8 residues within 4Å:- Chain A: I.76, R.114, L.117, T.118, S.119, G.313, R.316, S.355
Ligand excluded by PLIPGOL.8: 5 residues within 4Å:- Chain C: R.114, V.143, K.145, R.316, G.356
Ligand excluded by PLIPGOL.9: 3 residues within 4Å:- Chain C: R.60, N.61, Y.85
Ligand excluded by PLIPGOL.10: 5 residues within 4Å:- Chain A: D.103, E.104
- Chain C: R.441, L.442, K.444
Ligand excluded by PLIPGOL.11: 6 residues within 4Å:- Chain C: L.27, A.38, A.39, S.40, S.41, R.44
Ligand excluded by PLIPGOL.14: 9 residues within 4Å:- Chain E: G.272, A.273, I.278, G.280, E.281, N.282, C.283
- Chain K: N.81, K.115
Ligand excluded by PLIPGOL.15: 8 residues within 4Å:- Chain E: K.115
- Chain K: G.272, A.273, I.278, G.280, E.281, N.282, C.283
Ligand excluded by PLIPGOL.16: 5 residues within 4Å:- Chain E: R.114, V.143, K.145, R.316, G.356
Ligand excluded by PLIPGOL.17: 8 residues within 4Å:- Chain E: I.76, R.114, L.117, T.118, S.119, G.313, R.316, S.355
Ligand excluded by PLIPGOL.20: 5 residues within 4Å:- Chain G: R.114, V.143, K.145, R.316, G.356
Ligand excluded by PLIPGOL.21: 3 residues within 4Å:- Chain G: R.60, N.61, Y.85
Ligand excluded by PLIPGOL.22: 5 residues within 4Å:- Chain E: D.103, E.104
- Chain G: R.441, L.442, K.444
Ligand excluded by PLIPGOL.23: 6 residues within 4Å:- Chain G: L.27, A.38, A.39, S.40, S.41, R.44
Ligand excluded by PLIPGOL.26: 9 residues within 4Å:- Chain C: N.81, K.115
- Chain I: G.272, A.273, I.278, G.280, E.281, N.282, C.283
Ligand excluded by PLIPGOL.27: 8 residues within 4Å:- Chain C: G.272, A.273, I.278, G.280, E.281, N.282, C.283
- Chain I: K.115
Ligand excluded by PLIPGOL.28: 5 residues within 4Å:- Chain I: R.114, V.143, K.145, R.316, G.356
Ligand excluded by PLIPGOL.29: 8 residues within 4Å:- Chain I: I.76, R.114, L.117, T.118, S.119, G.313, R.316, S.355
Ligand excluded by PLIPGOL.32: 5 residues within 4Å:- Chain K: R.114, V.143, K.145, R.316, G.356
Ligand excluded by PLIPGOL.33: 3 residues within 4Å:- Chain K: R.60, N.61, Y.85
Ligand excluded by PLIPGOL.34: 5 residues within 4Å:- Chain I: D.103, E.104
- Chain K: R.441, L.442, K.444
Ligand excluded by PLIPGOL.35: 6 residues within 4Å:- Chain K: L.27, A.38, A.39, S.40, S.41, R.44
Ligand excluded by PLIP- 6 x B12: COBALAMIN(Non-covalent)
B12.6: 32 residues within 4Å:- Chain A: N.193, P.194, V.195, L.225, A.226, H.227, F.245, Q.246, S.247, E.257, F.258, S.295, F.329, I.330, M.401, L.402
- Chain B: Y.144, R.152, L.180, R.217, V.218, K.219, V.237, G.238, E.239, R.240, Y.252, E.264, A.265, R.267, C.269, S.271
39 PLIP interactions:24 interactions with chain B, 13 interactions with chain A, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions- Hydrophobic interactions: B:L.180, B:V.237, B:Y.252, B:E.264, B:R.267, A:F.258, A:F.329, A:F.329, A:F.329, A:L.402
- Hydrogen bonds: B:V.218, B:K.219, B:K.219, B:E.239, B:R.240, B:Y.252, B:Y.252, B:C.269, A:P.194, A:A.226, A:Q.246, A:S.247, A:E.257, A:S.295
- Water bridges: B:R.152, B:R.152, B:R.217, B:R.217, B:R.217, B:S.250, B:C.269, B:S.271, B:S.271, B:S.271, A:N.193, A:Y.334
- Salt bridges: B:R.217
- Metal complexes: B12.6, H2O.21
B12.12: 22 residues within 4Å:- Chain C: P.194, V.195, S.247, E.257, F.258, S.295, F.329, I.330, M.401, L.402
- Chain D: Y.144, R.152, L.180, R.217, V.218, E.239, R.240, Y.252, E.264, R.267, C.269, S.271
32 PLIP interactions:15 interactions with chain C, 16 interactions with chain D, 1 Ligand-Ligand interactions- Hydrophobic interactions: C:F.258, C:F.258, C:F.329, C:F.329, C:I.330, C:L.402, D:L.180, D:Y.252, D:E.264, D:R.267
- Hydrogen bonds: C:P.194, C:V.195, C:S.247, C:S.247, C:E.257, C:S.295, C:S.295, D:R.152, D:V.218, D:E.239, D:R.240, D:Y.252, D:Y.252
- Water bridges: C:N.193, C:E.257, D:R.217, D:R.217, D:R.240, D:C.269, D:C.269
- Salt bridges: D:R.217
- Metal complexes: B12.12
B12.18: 32 residues within 4Å:- Chain E: N.193, P.194, V.195, L.225, A.226, H.227, F.245, Q.246, S.247, E.257, F.258, S.295, F.329, I.330, M.401, L.402
- Chain F: Y.144, R.152, L.180, R.217, V.218, K.219, V.237, G.238, E.239, R.240, Y.252, E.264, A.265, R.267, C.269, S.271
39 PLIP interactions:13 interactions with chain E, 24 interactions with chain F, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions- Hydrophobic interactions: E:F.258, E:F.329, E:F.329, E:F.329, E:L.402, F:L.180, F:V.237, F:Y.252, F:E.264, F:R.267
- Hydrogen bonds: E:P.194, E:A.226, E:Q.246, E:S.247, E:E.257, E:S.295, F:V.218, F:K.219, F:K.219, F:E.239, F:R.240, F:Y.252, F:Y.252, F:C.269
- Water bridges: E:N.193, E:Y.334, F:R.152, F:R.152, F:R.217, F:R.217, F:R.217, F:S.250, F:C.269, F:S.271, F:S.271, F:S.271
- Salt bridges: F:R.217
- Metal complexes: B12.18, H2O.60
B12.24: 22 residues within 4Å:- Chain G: P.194, V.195, S.247, E.257, F.258, S.295, F.329, I.330, M.401, L.402
- Chain H: Y.144, R.152, L.180, R.217, V.218, E.239, R.240, Y.252, E.264, R.267, C.269, S.271
32 PLIP interactions:15 interactions with chain G, 16 interactions with chain H, 1 Ligand-Ligand interactions- Hydrophobic interactions: G:F.258, G:F.258, G:F.329, G:F.329, G:I.330, G:L.402, H:L.180, H:Y.252, H:E.264, H:R.267
- Hydrogen bonds: G:P.194, G:V.195, G:S.247, G:S.247, G:E.257, G:S.295, G:S.295, H:R.152, H:V.218, H:E.239, H:R.240, H:Y.252, H:Y.252
- Water bridges: G:N.193, G:E.257, H:R.217, H:R.217, H:R.240, H:C.269, H:C.269
- Salt bridges: H:R.217
- Metal complexes: B12.24
B12.30: 32 residues within 4Å:- Chain I: N.193, P.194, V.195, L.225, A.226, H.227, F.245, Q.246, S.247, E.257, F.258, S.295, F.329, I.330, M.401, L.402
- Chain J: Y.144, R.152, L.180, R.217, V.218, K.219, V.237, G.238, E.239, R.240, Y.252, E.264, A.265, R.267, C.269, S.271
39 PLIP interactions:24 interactions with chain J, 13 interactions with chain I, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions- Hydrophobic interactions: J:L.180, J:V.237, J:Y.252, J:E.264, J:R.267, I:F.258, I:F.329, I:F.329, I:F.329, I:L.402
- Hydrogen bonds: J:V.218, J:K.219, J:K.219, J:E.239, J:R.240, J:Y.252, J:Y.252, J:C.269, I:P.194, I:A.226, I:Q.246, I:S.247, I:E.257, I:S.295
- Water bridges: J:R.152, J:R.152, J:R.217, J:R.217, J:R.217, J:S.250, J:C.269, J:S.271, J:S.271, J:S.271, I:N.193, I:Y.334
- Salt bridges: J:R.217
- Metal complexes: B12.30, H2O.98
B12.36: 22 residues within 4Å:- Chain K: P.194, V.195, S.247, E.257, F.258, S.295, F.329, I.330, M.401, L.402
- Chain L: Y.144, R.152, L.180, R.217, V.218, E.239, R.240, Y.252, E.264, R.267, C.269, S.271
32 PLIP interactions:15 interactions with chain K, 16 interactions with chain L, 1 Ligand-Ligand interactions- Hydrophobic interactions: K:F.258, K:F.258, K:F.329, K:F.329, K:I.330, K:L.402, L:L.180, L:Y.252, L:E.264, L:R.267
- Hydrogen bonds: K:P.194, K:V.195, K:S.247, K:S.247, K:E.257, K:S.295, K:S.295, L:R.152, L:V.218, L:E.239, L:R.240, L:Y.252, L:Y.252
- Water bridges: K:N.193, K:E.257, L:R.217, L:R.217, L:R.240, L:C.269, L:C.269
- Salt bridges: L:R.217
- Metal complexes: B12.36
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shibata, N. et al., Crystal structures of ethanolamine ammonia-lyase complexed with coenzyme B12 analogs and substrates. J.Biol.Chem. (2010)
- Release Date
- 2010-06-02
- Peptides
- Ethanolamine ammonia-lyase heavy chain: ACEGIK
Ethanolamine ammonia-lyase light chain: BDFHJL - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CE
AG
CI
AK
CB
BD
DF
BH
DJ
BL
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- hetero-6-6-mer
- Ligands
- 6 x 2A1: (2S)-2-aminopropan-1-ol(Non-covalent)
- 24 x GOL: GLYCEROL(Non-functional Binders)
- 6 x B12: COBALAMIN(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shibata, N. et al., Crystal structures of ethanolamine ammonia-lyase complexed with coenzyme B12 analogs and substrates. J.Biol.Chem. (2010)
- Release Date
- 2010-06-02
- Peptides
- Ethanolamine ammonia-lyase heavy chain: ACEGIK
Ethanolamine ammonia-lyase light chain: BDFHJL - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CE
AG
CI
AK
CB
BD
DF
BH
DJ
BL
D