SMTL ID : 3ac0.1

Crystal structure of Beta-glucosidase from Kluyveromyces marxianus in complex with glucose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.54 Å

Oligo State

homo-tetramer

Ligands

4 x BGC: beta-D-glucopyranose(Non-covalent)

BGC.1: 13 residues within 4Å: Chain A: W.28, D.45, L.99, R.113, K.146, H.147, R.157, M.190, Y.193, D.225, W.226, S.356, E.590 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:R.51, A:R.113, A:R.113, A:K.146, A:H.147, A:H.147, A:R.157, A:S.356, A:E.590 Water bridges: A:K.146 BGC.2: 13 residues within 4Å: Chain B: W.28, D.45, L.99, R.113, K.146, H.147, R.157, M.190, Y.193, D.225, W.226, S.356, E.590 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:R.113, B:R.113, B:K.146, B:H.147, B:H.147, B:R.157, B:S.356, B:E.590 Water bridges: B:K.146 BGC.3: 13 residues within 4Å: Chain C: W.28, D.45, L.99, R.113, K.146, H.147, R.157, M.190, Y.193, D.225, W.226, S.356, E.590 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:R.113, C:R.113, C:K.146, C:H.147, C:H.147, C:R.157, C:R.157, C:Y.193, C:S.356 Water bridges: C:K.146 BGC.4: 13 residues within 4Å: Chain D: W.28, D.45, L.99, R.113, K.146, H.147, R.157, M.190, Y.193, D.225, W.226, S.356, E.590 10 PLIP interactions: 10 interactions with chain D Hydrogen bonds: D:R.113, D:R.113, D:K.146, D:H.147, D:H.147, D:R.157, D:Y.193, D:S.356, D:E.590 Water bridges: D:K.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yoshida, E. et al., Role of a PA14 domain in determining substrate specificity of a glycoside hydrolase family 3 beta-glucosidase from Kluyveromyces marxianus. Biochem.J. (2010)

Release Date

2010-08-11

Peptides

Beta-glucosidase I: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Beta-glucosidase I

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