SMTL ID : 3acd.1

Crystal structure of hypoxanthine-guanine phosphoribosyltransferase with IMP from Thermus thermophilus HB8

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

homo-dimer

Ligands

2 x IMP: INOSINIC ACID(Non-covalent)

IMP.1: 13 residues within 4Å: Chain A: E.102, D.103, I.104, V.105, D.106, T.107, G.108, L.109, T.110, K.134, A.154, Y.155, V.156 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:E.102, A:D.103, A:D.106, A:D.106, A:T.107, A:T.107, A:T.107, A:G.108, A:L.109, A:T.110, A:T.110, A:K.134, A:Y.155, A:V.156, A:V.156 Water bridges: A:G.47, A:D.103, A:D.103, A:T.107, A:T.107, A:L.111, A:D.162 IMP.4: 13 residues within 4Å: Chain B: E.102, D.103, I.104, V.105, D.106, T.107, G.108, L.109, T.110, K.134, A.154, Y.155, V.156 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:E.102, B:D.103, B:D.106, B:T.107, B:T.107, B:T.107, B:G.108, B:L.109, B:T.110, B:K.134, B:V.156, B:V.156 Water bridges: B:G.47, B:D.103, B:L.111, B:D.162

4 x DIO: 1,4-DIETHYLENE DIOXIDE(Non-covalent)

DIO.2: 6 residues within 4Å: Chain A: D.33, Y.34, K.37, D.97, S.125, R.127 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.37 DIO.3: 7 residues within 4Å: Chain A: P.60, L.61, P.62 Chain B: M.4, F.5, D.167, L.170 2 PLIP interactions: 2 interactions with chain B Water bridges: B:D.167, B:N.169 DIO.5: 6 residues within 4Å: Chain B: D.33, Y.34, K.37, D.97, S.125, R.127 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.37 DIO.6: 7 residues within 4Å: Chain A: M.4, F.5, D.167, L.170 Chain B: P.60, L.61, P.62 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.167 Water bridges: A:D.167, A:N.169

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kanagawa, M. et al., Structures of hypoxanthine-guanine phosphoribosyltransferase (TTHA0220) from Thermus thermophilus HB8. Acta Crystallogr.,Sect.F (2010)

Release Date

2010-02-09

Peptides

Hypoxanthine-guanine phosphoribosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Hypoxanthine-guanine phosphoribosyltransferase

Related Entries With Identical Sequence