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SMTL ID : 3acd.1
Crystal structure of hypoxanthine-guanine phosphoribosyltransferase with IMP from Thermus thermophilus HB8
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.89 Å
Oligo State
homo-dimer
Ligands
2 x
IMP
:
INOSINIC ACID
(Non-covalent)
IMP.1:
13 residues within 4Å:
Chain A:
E.102
,
D.103
,
I.104
,
V.105
,
D.106
,
T.107
,
G.108
,
L.109
,
T.110
,
K.134
,
A.154
,
Y.155
,
V.156
22
PLIP interactions
:
22 interactions with chain A
Hydrogen bonds:
A:E.102
,
A:D.103
,
A:D.106
,
A:D.106
,
A:T.107
,
A:T.107
,
A:T.107
,
A:G.108
,
A:L.109
,
A:T.110
,
A:T.110
,
A:K.134
,
A:Y.155
,
A:V.156
,
A:V.156
Water bridges:
A:G.47
,
A:D.103
,
A:D.103
,
A:T.107
,
A:T.107
,
A:L.111
,
A:D.162
IMP.4:
13 residues within 4Å:
Chain B:
E.102
,
D.103
,
I.104
,
V.105
,
D.106
,
T.107
,
G.108
,
L.109
,
T.110
,
K.134
,
A.154
,
Y.155
,
V.156
16
PLIP interactions
:
16 interactions with chain B
Hydrogen bonds:
B:E.102
,
B:D.103
,
B:D.106
,
B:T.107
,
B:T.107
,
B:T.107
,
B:G.108
,
B:L.109
,
B:T.110
,
B:K.134
,
B:V.156
,
B:V.156
Water bridges:
B:G.47
,
B:D.103
,
B:L.111
,
B:D.162
4 x
DIO
:
1,4-DIETHYLENE DIOXIDE
(Non-covalent)
DIO.2:
6 residues within 4Å:
Chain A:
D.33
,
Y.34
,
K.37
,
D.97
,
S.125
,
R.127
1
PLIP interactions
:
1 interactions with chain A
Hydrogen bonds:
A:K.37
DIO.3:
7 residues within 4Å:
Chain A:
P.60
,
L.61
,
P.62
Chain B:
M.4
,
F.5
,
D.167
,
L.170
2
PLIP interactions
:
2 interactions with chain B
Water bridges:
B:D.167
,
B:N.169
DIO.5:
6 residues within 4Å:
Chain B:
D.33
,
Y.34
,
K.37
,
D.97
,
S.125
,
R.127
1
PLIP interactions
:
1 interactions with chain B
Hydrogen bonds:
B:K.37
DIO.6:
7 residues within 4Å:
Chain A:
M.4
,
F.5
,
D.167
,
L.170
Chain B:
P.60
,
L.61
,
P.62
3
PLIP interactions
:
3 interactions with chain A
Hydrogen bonds:
A:D.167
Water bridges:
A:D.167
,
A:N.169
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Kanagawa, M. et al., Structures of hypoxanthine-guanine phosphoribosyltransferase (TTHA0220) from Thermus thermophilus HB8. Acta Crystallogr.,Sect.F (2010)
Release Date
2010-02-09
Peptides
Hypoxanthine-guanine phosphoribosyltransferase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
A
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Secondary Structure
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2° Structure
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Hypoxanthine-guanine phosphoribosyltransferase
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