SMTL ID : 3ad4.1

Crystal Structure of Methoxy Benzofuran Derivative bound to the Kinase domain of human LCK, (auto-phosphorylated on TYR394)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: Q.74, R.75, S.153, K.155 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.74, A:S.153 Water bridges: A:S.149, A:K.155 Salt bridges: A:R.75, A:K.155 SO4.2: 1 residues within 4Å: Chain A: Y.265 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.265

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 4 residues within 4Å: Chain A: W.9, E.15, T.84, Q.85 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.85

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.4: 5 residues within 4Å: Chain A: P.179, I.180, K.181, W.182, N.222 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.180, A:K.181, A:N.222

1 x KBM: (4-chlorophenyl)(5-methoxy-1-benzofuran-2-yl)methanone(Non-covalent)

KBM.5: 10 residues within 4Å: Chain A: L.27, V.35, A.47, T.92, E.93, Y.94, M.95, E.96, G.98, L.147 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.27, A:V.35, A:A.47, A:L.147 Hydrogen bonds: A:M.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ozawa, M. et al., Ab initio fragment molecular orbital study of ligand binding to leukocyte-specific protein tyrosine (LCK) kinase. To be Published

Release Date

2011-01-19

Peptides

Proto-oncogene tyrosine-protein kinase LCK: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Proto-oncogene tyrosine-protein kinase LCK

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