SMTL ID : 3af7.1

Crystal Structure of 25Pd(allyl)/apo-Fr

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

homo-24-mer

Ligands

24 x CD: CADMIUM ION(Non-covalent)

CD.1: 2 residues within 4Å: Chain A: D.80 Chain M: Q.82 Ligand excluded by PLIP CD.13: 2 residues within 4Å: Chain B: D.80 Chain N: Q.82 Ligand excluded by PLIP CD.25: 2 residues within 4Å: Chain C: D.80 Chain P: Q.82 Ligand excluded by PLIP CD.37: 2 residues within 4Å: Chain D: D.80 Chain O: Q.82 Ligand excluded by PLIP CD.49: 2 residues within 4Å: Chain E: D.80 Chain W: Q.82 Ligand excluded by PLIP CD.61: 2 residues within 4Å: Chain F: D.80 Chain X: Q.82 Ligand excluded by PLIP CD.73: 2 residues within 4Å: Chain G: D.80 Chain V: Q.82 Ligand excluded by PLIP CD.85: 2 residues within 4Å: Chain H: D.80 Chain U: Q.82 Ligand excluded by PLIP CD.97: 2 residues within 4Å: Chain I: D.80 Chain T: Q.82 Ligand excluded by PLIP CD.109: 2 residues within 4Å: Chain J: D.80 Chain S: Q.82 Ligand excluded by PLIP CD.121: 2 residues within 4Å: Chain K: D.80 Chain Q: Q.82 Ligand excluded by PLIP CD.133: 2 residues within 4Å: Chain L: D.80 Chain R: Q.82 Ligand excluded by PLIP CD.145: 2 residues within 4Å: Chain A: Q.82 Chain M: D.80 Ligand excluded by PLIP CD.157: 2 residues within 4Å: Chain B: Q.82 Chain N: D.80 Ligand excluded by PLIP CD.169: 2 residues within 4Å: Chain D: Q.82 Chain O: D.80 Ligand excluded by PLIP CD.181: 2 residues within 4Å: Chain C: Q.82 Chain P: D.80 Ligand excluded by PLIP CD.193: 2 residues within 4Å: Chain K: Q.82 Chain Q: D.80 Ligand excluded by PLIP CD.205: 2 residues within 4Å: Chain L: Q.82 Chain R: D.80 Ligand excluded by PLIP CD.217: 2 residues within 4Å: Chain J: Q.82 Chain S: D.80 Ligand excluded by PLIP CD.229: 2 residues within 4Å: Chain I: Q.82 Chain T: D.80 Ligand excluded by PLIP CD.241: 2 residues within 4Å: Chain H: Q.82 Chain U: D.80 Ligand excluded by PLIP CD.253: 2 residues within 4Å: Chain G: Q.82 Chain V: D.80 Ligand excluded by PLIP CD.265: 2 residues within 4Å: Chain E: Q.82 Chain W: D.80 Ligand excluded by PLIP CD.277: 2 residues within 4Å: Chain F: Q.82 Chain X: D.80 Ligand excluded by PLIP

24 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.14: 3 residues within 4Å: Chain B: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.26: 3 residues within 4Å: Chain C: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.38: 3 residues within 4Å: Chain D: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.50: 3 residues within 4Å: Chain E: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.62: 3 residues within 4Å: Chain F: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.74: 3 residues within 4Å: Chain G: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.86: 3 residues within 4Å: Chain H: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.98: 3 residues within 4Å: Chain I: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.110: 3 residues within 4Å: Chain J: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.122: 3 residues within 4Å: Chain K: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.134: 3 residues within 4Å: Chain L: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.146: 3 residues within 4Å: Chain M: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.158: 3 residues within 4Å: Chain N: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.170: 3 residues within 4Å: Chain O: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.182: 3 residues within 4Å: Chain P: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.194: 3 residues within 4Å: Chain Q: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.206: 3 residues within 4Å: Chain R: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.218: 3 residues within 4Å: Chain S: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.230: 3 residues within 4Å: Chain T: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.242: 3 residues within 4Å: Chain U: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.254: 3 residues within 4Å: Chain V: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.266: 3 residues within 4Å: Chain W: R.5, Q.6, N.7 Ligand excluded by PLIP SO4.278: 3 residues within 4Å: Chain X: R.5, Q.6, N.7 Ligand excluded by PLIP

48 x PD: PALLADIUM ION(Non-covalent)

PD.3: 4 residues within 4Å: Chain A: D.38, E.45, C.48 Ligands: PLL.5 Ligand excluded by PLIP PD.4: 4 residues within 4Å: Chain A: C.48, H.49, R.52 Ligands: PLL.5 Ligand excluded by PLIP PD.15: 4 residues within 4Å: Chain B: D.38, E.45, C.48 Ligands: PLL.17 Ligand excluded by PLIP PD.16: 4 residues within 4Å: Chain B: C.48, H.49, R.52 Ligands: PLL.17 Ligand excluded by PLIP PD.27: 4 residues within 4Å: Chain C: D.38, E.45, C.48 Ligands: PLL.29 Ligand excluded by PLIP PD.28: 4 residues within 4Å: Chain C: C.48, H.49, R.52 Ligands: PLL.29 Ligand excluded by PLIP PD.39: 4 residues within 4Å: Chain D: D.38, E.45, C.48 Ligands: PLL.41 Ligand excluded by PLIP PD.40: 4 residues within 4Å: Chain D: C.48, H.49, R.52 Ligands: PLL.41 Ligand excluded by PLIP PD.51: 4 residues within 4Å: Chain E: D.38, E.45, C.48 Ligands: PLL.53 Ligand excluded by PLIP PD.52: 4 residues within 4Å: Chain E: C.48, H.49, R.52 Ligands: PLL.53 Ligand excluded by PLIP PD.63: 4 residues within 4Å: Chain F: D.38, E.45, C.48 Ligands: PLL.65 Ligand excluded by PLIP PD.64: 4 residues within 4Å: Chain F: C.48, H.49, R.52 Ligands: PLL.65 Ligand excluded by PLIP PD.75: 4 residues within 4Å: Chain G: D.38, E.45, C.48 Ligands: PLL.77 Ligand excluded by PLIP PD.76: 4 residues within 4Å: Chain G: C.48, H.49, R.52 Ligands: PLL.77 Ligand excluded by PLIP PD.87: 4 residues within 4Å: Chain H: D.38, E.45, C.48 Ligands: PLL.89 Ligand excluded by PLIP PD.88: 4 residues within 4Å: Chain H: C.48, H.49, R.52 Ligands: PLL.89 Ligand excluded by PLIP PD.99: 4 residues within 4Å: Chain I: D.38, E.45, C.48 Ligands: PLL.101 Ligand excluded by PLIP PD.100: 4 residues within 4Å: Chain I: C.48, H.49, R.52 Ligands: PLL.101 Ligand excluded by PLIP PD.111: 4 residues within 4Å: Chain J: D.38, E.45, C.48 Ligands: PLL.113 Ligand excluded by PLIP PD.112: 4 residues within 4Å: Chain J: C.48, H.49, R.52 Ligands: PLL.113 Ligand excluded by PLIP PD.123: 4 residues within 4Å: Chain K: D.38, E.45, C.48 Ligands: PLL.125 Ligand excluded by PLIP PD.124: 4 residues within 4Å: Chain K: C.48, H.49, R.52 Ligands: PLL.125 Ligand excluded by PLIP PD.135: 4 residues within 4Å: Chain L: D.38, E.45, C.48 Ligands: PLL.137 Ligand excluded by PLIP PD.136: 4 residues within 4Å: Chain L: C.48, H.49, R.52 Ligands: PLL.137 Ligand excluded by PLIP PD.147: 4 residues within 4Å: Chain M: D.38, E.45, C.48 Ligands: PLL.149 Ligand excluded by PLIP PD.148: 4 residues within 4Å: Chain M: C.48, H.49, R.52 Ligands: PLL.149 Ligand excluded by PLIP PD.159: 4 residues within 4Å: Chain N: D.38, E.45, C.48 Ligands: PLL.161 Ligand excluded by PLIP PD.160: 4 residues within 4Å: Chain N: C.48, H.49, R.52 Ligands: PLL.161 Ligand excluded by PLIP PD.171: 4 residues within 4Å: Chain O: D.38, E.45, C.48 Ligands: PLL.173 Ligand excluded by PLIP PD.172: 4 residues within 4Å: Chain O: C.48, H.49, R.52 Ligands: PLL.173 Ligand excluded by PLIP PD.183: 4 residues within 4Å: Chain P: D.38, E.45, C.48 Ligands: PLL.185 Ligand excluded by PLIP PD.184: 4 residues within 4Å: Chain P: C.48, H.49, R.52 Ligands: PLL.185 Ligand excluded by PLIP PD.195: 4 residues within 4Å: Chain Q: D.38, E.45, C.48 Ligands: PLL.197 Ligand excluded by PLIP PD.196: 4 residues within 4Å: Chain Q: C.48, H.49, R.52 Ligands: PLL.197 Ligand excluded by PLIP PD.207: 4 residues within 4Å: Chain R: D.38, E.45, C.48 Ligands: PLL.209 Ligand excluded by PLIP PD.208: 4 residues within 4Å: Chain R: C.48, H.49, R.52 Ligands: PLL.209 Ligand excluded by PLIP PD.219: 4 residues within 4Å: Chain S: D.38, E.45, C.48 Ligands: PLL.221 Ligand excluded by PLIP PD.220: 4 residues within 4Å: Chain S: C.48, H.49, R.52 Ligands: PLL.221 Ligand excluded by PLIP PD.231: 4 residues within 4Å: Chain T: D.38, E.45, C.48 Ligands: PLL.233 Ligand excluded by PLIP PD.232: 4 residues within 4Å: Chain T: C.48, H.49, R.52 Ligands: PLL.233 Ligand excluded by PLIP PD.243: 4 residues within 4Å: Chain U: D.38, E.45, C.48 Ligands: PLL.245 Ligand excluded by PLIP PD.244: 4 residues within 4Å: Chain U: C.48, H.49, R.52 Ligands: PLL.245 Ligand excluded by PLIP PD.255: 4 residues within 4Å: Chain V: D.38, E.45, C.48 Ligands: PLL.257 Ligand excluded by PLIP PD.256: 4 residues within 4Å: Chain V: C.48, H.49, R.52 Ligands: PLL.257 Ligand excluded by PLIP PD.267: 4 residues within 4Å: Chain W: D.38, E.45, C.48 Ligands: PLL.269 Ligand excluded by PLIP PD.268: 4 residues within 4Å: Chain W: C.48, H.49, R.52 Ligands: PLL.269 Ligand excluded by PLIP PD.279: 4 residues within 4Å: Chain X: D.38, E.45, C.48 Ligands: PLL.281 Ligand excluded by PLIP PD.280: 4 residues within 4Å: Chain X: C.48, H.49, R.52 Ligands: PLL.281 Ligand excluded by PLIP

72 x PLL: Palladium(II) allyl complex(Non-covalent)

PLL.5: 6 residues within 4Å: Chain A: D.38, C.48, H.49, R.52 Ligands: PD.3, PD.4 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.48 PLL.6: 10 residues within 4Å: Chain A: H.114, C.126, E.130, L.134 Chain E: P.123, C.126, D.127 Ligands: PLL.7, PLL.54, PLL.102 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.114, A:C.126 PLL.7: 8 residues within 4Å: Chain A: H.114, S.118, P.123, C.126 Chain I: H.114 Ligands: PLL.6, PLL.55, PLL.103 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:C.126, H2O.5, H2O.33, H2O.61 PLL.17: 6 residues within 4Å: Chain B: D.38, C.48, H.49, R.52 Ligands: PD.15, PD.16 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:C.48 PLL.18: 10 residues within 4Å: Chain B: H.114, C.126, E.130, L.134 Chain G: P.123, C.126, D.127 Ligands: PLL.19, PLL.78, PLL.138 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:H.114, B:C.126 PLL.19: 8 residues within 4Å: Chain B: H.114, S.118, P.123, C.126 Chain L: H.114 Ligands: PLL.18, PLL.79, PLL.139 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:C.126, H2O.12, H2O.47, H2O.82 PLL.29: 6 residues within 4Å: Chain C: D.38, C.48, H.49, R.52 Ligands: PD.27, PD.28 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:C.48 PLL.30: 10 residues within 4Å: Chain C: H.114, C.126, E.130, L.134 Chain H: P.123, C.126, D.127 Ligands: PLL.31, PLL.90, PLL.114 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:H.114, C:C.126 PLL.31: 8 residues within 4Å: Chain C: H.114, S.118, P.123, C.126 Chain J: H.114 Ligands: PLL.30, PLL.91, PLL.115 4 PLIP interactions: 1 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:C.126, H2O.19, H2O.54, H2O.68 PLL.41: 6 residues within 4Å: Chain D: D.38, C.48, H.49, R.52 Ligands: PD.39, PD.40 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:C.48 PLL.42: 10 residues within 4Å: Chain D: H.114, C.126, E.130, L.134 Chain F: P.123, C.126, D.127 Ligands: PLL.43, PLL.66, PLL.126 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:H.114, D:C.126 PLL.43: 8 residues within 4Å: Chain D: H.114, S.118, P.123, C.126 Chain K: H.114 Ligands: PLL.42, PLL.67, PLL.127 4 PLIP interactions: 1 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:C.126, H2O.26, H2O.40, H2O.75 PLL.53: 6 residues within 4Å: Chain E: D.38, C.48, H.49, R.52 Ligands: PD.51, PD.52 1 PLIP interactions: 1 interactions with chain E Metal complexes: E:C.48 PLL.54: 10 residues within 4Å: Chain E: H.114, C.126, E.130, L.134 Chain I: P.123, C.126, D.127 Ligands: PLL.6, PLL.55, PLL.102 2 PLIP interactions: 2 interactions with chain E Metal complexes: E:H.114, E:C.126 PLL.55: 8 residues within 4Å: Chain A: H.114 Chain E: H.114, S.118, P.123, C.126 Ligands: PLL.7, PLL.54, PLL.103 4 PLIP interactions: 1 interactions with chain E, 3 Ligand-Water interactions Metal complexes: E:C.126, H2O.5, H2O.33, H2O.61 PLL.65: 6 residues within 4Å: Chain F: D.38, C.48, H.49, R.52 Ligands: PD.63, PD.64 1 PLIP interactions: 1 interactions with chain F Metal complexes: F:C.48 PLL.66: 10 residues within 4Å: Chain F: H.114, C.126, E.130, L.134 Chain K: P.123, C.126, D.127 Ligands: PLL.42, PLL.67, PLL.126 2 PLIP interactions: 2 interactions with chain F Metal complexes: F:H.114, F:C.126 PLL.67: 8 residues within 4Å: Chain D: H.114 Chain F: H.114, S.118, P.123, C.126 Ligands: PLL.43, PLL.66, PLL.127 4 PLIP interactions: 1 interactions with chain F, 3 Ligand-Water interactions Metal complexes: F:C.126, H2O.26, H2O.40, H2O.75 PLL.77: 6 residues within 4Å: Chain G: D.38, C.48, H.49, R.52 Ligands: PD.75, PD.76 1 PLIP interactions: 1 interactions with chain G Metal complexes: G:C.48 PLL.78: 10 residues within 4Å: Chain G: H.114, C.126, E.130, L.134 Chain L: P.123, C.126, D.127 Ligands: PLL.18, PLL.79, PLL.138 2 PLIP interactions: 2 interactions with chain G Metal complexes: G:H.114, G:C.126 PLL.79: 8 residues within 4Å: Chain B: H.114 Chain G: H.114, S.118, P.123, C.126 Ligands: PLL.19, PLL.78, PLL.139 4 PLIP interactions: 1 interactions with chain G, 3 Ligand-Water interactions Metal complexes: G:C.126, H2O.12, H2O.47, H2O.82 PLL.89: 6 residues within 4Å: Chain H: D.38, C.48, H.49, R.52 Ligands: PD.87, PD.88 1 PLIP interactions: 1 interactions with chain H Metal complexes: H:C.48 PLL.90: 10 residues within 4Å: Chain H: H.114, C.126, E.130, L.134 Chain J: P.123, C.126, D.127 Ligands: PLL.30, PLL.91, PLL.114 2 PLIP interactions: 2 interactions with chain H Metal complexes: H:H.114, H:C.126 PLL.91: 8 residues within 4Å: Chain C: H.114 Chain H: H.114, S.118, P.123, C.126 Ligands: PLL.31, PLL.90, PLL.115 4 PLIP interactions: 1 interactions with chain H, 3 Ligand-Water interactions Metal complexes: H:C.126, H2O.19, H2O.54, H2O.68 PLL.101: 6 residues within 4Å: Chain I: D.38, C.48, H.49, R.52 Ligands: PD.99, PD.100 1 PLIP interactions: 1 interactions with chain I Metal complexes: I:C.48 PLL.102: 10 residues within 4Å: Chain A: P.123, C.126, D.127 Chain I: H.114, C.126, E.130, L.134 Ligands: PLL.6, PLL.54, PLL.103 2 PLIP interactions: 2 interactions with chain I Metal complexes: I:H.114, I:C.126 PLL.103: 8 residues within 4Å: Chain E: H.114 Chain I: H.114, S.118, P.123, C.126 Ligands: PLL.7, PLL.55, PLL.102 4 PLIP interactions: 1 interactions with chain I, 3 Ligand-Water interactions Metal complexes: I:C.126, H2O.5, H2O.33, H2O.61 PLL.113: 6 residues within 4Å: Chain J: D.38, C.48, H.49, R.52 Ligands: PD.111, PD.112 1 PLIP interactions: 1 interactions with chain J Metal complexes: J:C.48 PLL.114: 10 residues within 4Å: Chain C: P.123, C.126, D.127 Chain J: H.114, C.126, E.130, L.134 Ligands: PLL.30, PLL.90, PLL.115 2 PLIP interactions: 2 interactions with chain J Metal complexes: J:H.114, J:C.126 PLL.115: 8 residues within 4Å: Chain H: H.114 Chain J: H.114, S.118, P.123, C.126 Ligands: PLL.31, PLL.91, PLL.114 4 PLIP interactions: 1 interactions with chain J, 3 Ligand-Water interactions Metal complexes: J:C.126, H2O.19, H2O.54, H2O.68 PLL.125: 6 residues within 4Å: Chain K: D.38, C.48, H.49, R.52 Ligands: PD.123, PD.124 1 PLIP interactions: 1 interactions with chain K Metal complexes: K:C.48 PLL.126: 10 residues within 4Å: Chain D: P.123, C.126, D.127 Chain K: H.114, C.126, E.130, L.134 Ligands: PLL.42, PLL.66, PLL.127 2 PLIP interactions: 2 interactions with chain K Metal complexes: K:H.114, K:C.126 PLL.127: 8 residues within 4Å: Chain F: H.114 Chain K: H.114, S.118, P.123, C.126 Ligands: PLL.43, PLL.67, PLL.126 4 PLIP interactions: 1 interactions with chain K, 3 Ligand-Water interactions Metal complexes: K:C.126, H2O.26, H2O.40, H2O.75 PLL.137: 6 residues within 4Å: Chain L: D.38, C.48, H.49, R.52 Ligands: PD.135, PD.136 1 PLIP interactions: 1 interactions with chain L Metal complexes: L:C.48 PLL.138: 10 residues within 4Å: Chain B: P.123, C.126, D.127 Chain L: H.114, C.126, E.130, L.134 Ligands: PLL.18, PLL.78, PLL.139 2 PLIP interactions: 2 interactions with chain L Metal complexes: L:H.114, L:C.126 PLL.139: 8 residues within 4Å: Chain G: H.114 Chain L: H.114, S.118, P.123, C.126 Ligands: PLL.19, PLL.79, PLL.138 4 PLIP interactions: 1 interactions with chain L, 3 Ligand-Water interactions Metal complexes: L:C.126, H2O.12, H2O.47, H2O.82 PLL.149: 6 residues within 4Å: Chain M: D.38, C.48, H.49, R.52 Ligands: PD.147, PD.148 1 PLIP interactions: 1 interactions with chain M Metal complexes: M:C.48 PLL.150: 10 residues within 4Å: Chain M: H.114, C.126, E.130, L.134 Chain Q: P.123, C.126, D.127 Ligands: PLL.151, PLL.198, PLL.246 2 PLIP interactions: 2 interactions with chain M Metal complexes: M:H.114, M:C.126 PLL.151: 8 residues within 4Å: Chain M: H.114, S.118, P.123, C.126 Chain U: H.114 Ligands: PLL.150, PLL.199, PLL.247 4 PLIP interactions: 1 interactions with chain M, 3 Ligand-Water interactions Metal complexes: M:C.126, H2O.89, H2O.118, H2O.146 PLL.161: 6 residues within 4Å: Chain N: D.38, C.48, H.49, R.52 Ligands: PD.159, PD.160 1 PLIP interactions: 1 interactions with chain N Metal complexes: N:C.48 PLL.162: 10 residues within 4Å: Chain N: H.114, C.126, E.130, L.134 Chain S: P.123, C.126, D.127 Ligands: PLL.163, PLL.222, PLL.282 2 PLIP interactions: 2 interactions with chain N Metal complexes: N:H.114, N:C.126 PLL.163: 8 residues within 4Å: Chain N: H.114, S.118, P.123, C.126 Chain X: H.114 Ligands: PLL.162, PLL.223, PLL.283 4 PLIP interactions: 1 interactions with chain N, 3 Ligand-Water interactions Metal complexes: N:C.126, H2O.97, H2O.132, H2O.167 PLL.173: 6 residues within 4Å: Chain O: D.38, C.48, H.49, R.52 Ligands: PD.171, PD.172 1 PLIP interactions: 1 interactions with chain O Metal complexes: O:C.48 PLL.174: 10 residues within 4Å: Chain O: H.114, C.126, E.130, L.134 Chain T: P.123, C.126, D.127 Ligands: PLL.175, PLL.234, PLL.258 2 PLIP interactions: 2 interactions with chain O Metal complexes: O:H.114, O:C.126 PLL.175: 8 residues within 4Å: Chain O: H.114, S.118, P.123, C.126 Chain V: H.114 Ligands: PLL.174, PLL.235, PLL.259 4 PLIP interactions: 1 interactions with chain O, 3 Ligand-Water interactions Metal complexes: O:C.126, H2O.104, H2O.139, H2O.153 PLL.185: 6 residues within 4Å: Chain P: D.38, C.48, H.49, R.52 Ligands: PD.183, PD.184 1 PLIP interactions: 1 interactions with chain P Metal complexes: P:C.48 PLL.186: 10 residues within 4Å: Chain P: H.114, C.126, E.130, L.134 Chain R: P.123, C.126, D.127 Ligands: PLL.187, PLL.210, PLL.270 2 PLIP interactions: 2 interactions with chain P Metal complexes: P:H.114, P:C.126 PLL.187: 8 residues within 4Å: Chain P: H.114, S.118, P.123, C.126 Chain W: H.114 Ligands: PLL.186, PLL.211, PLL.271 4 PLIP interactions: 1 interactions with chain P, 3 Ligand-Water interactions Metal complexes: P:C.126, H2O.111, H2O.125, H2O.160 PLL.197: 6 residues within 4Å: Chain Q: D.38, C.48, H.49, R.52 Ligands: PD.195, PD.196 1 PLIP interactions: 1 interactions with chain Q Metal complexes: Q:C.48 PLL.198: 10 residues within 4Å: Chain Q: H.114, C.126, E.130, L.134 Chain U: P.123, C.126, D.127 Ligands: PLL.150, PLL.199, PLL.246 2 PLIP interactions: 2 interactions with chain Q Metal complexes: Q:H.114, Q:C.126 PLL.199: 8 residues within 4Å: Chain M: H.114 Chain Q: H.114, S.118, P.123, C.126 Ligands: PLL.151, PLL.198, PLL.247 4 PLIP interactions: 1 interactions with chain Q, 3 Ligand-Water interactions Metal complexes: Q:C.126, H2O.89, H2O.118, H2O.146 PLL.209: 6 residues within 4Å: Chain R: D.38, C.48, H.49, R.52 Ligands: PD.207, PD.208 1 PLIP interactions: 1 interactions with chain R Metal complexes: R:C.48 PLL.210: 10 residues within 4Å: Chain R: H.114, C.126, E.130, L.134 Chain W: P.123, C.126, D.127 Ligands: PLL.186, PLL.211, PLL.270 2 PLIP interactions: 2 interactions with chain R Metal complexes: R:H.114, R:C.126 PLL.211: 8 residues within 4Å: Chain P: H.114 Chain R: H.114, S.118, P.123, C.126 Ligands: PLL.187, PLL.210, PLL.271 4 PLIP interactions: 1 interactions with chain R, 3 Ligand-Water interactions Metal complexes: R:C.126, H2O.111, H2O.125, H2O.160 PLL.221: 6 residues within 4Å: Chain S: D.38, C.48, H.49, R.52 Ligands: PD.219, PD.220 1 PLIP interactions: 1 interactions with chain S Metal complexes: S:C.48 PLL.222: 10 residues within 4Å: Chain S: H.114, C.126, E.130, L.134 Chain X: P.123, C.126, D.127 Ligands: PLL.162, PLL.223, PLL.282 2 PLIP interactions: 2 interactions with chain S Metal complexes: S:H.114, S:C.126 PLL.223: 8 residues within 4Å: Chain N: H.114 Chain S: H.114, S.118, P.123, C.126 Ligands: PLL.163, PLL.222, PLL.283 4 PLIP interactions: 1 interactions with chain S, 3 Ligand-Water interactions Metal complexes: S:C.126, H2O.97, H2O.132, H2O.167 PLL.233: 6 residues within 4Å: Chain T: D.38, C.48, H.49, R.52 Ligands: PD.231, PD.232 1 PLIP interactions: 1 interactions with chain T Metal complexes: T:C.48 PLL.234: 10 residues within 4Å: Chain T: H.114, C.126, E.130, L.134 Chain V: P.123, C.126, D.127 Ligands: PLL.174, PLL.235, PLL.258 2 PLIP interactions: 2 interactions with chain T Metal complexes: T:H.114, T:C.126 PLL.235: 8 residues within 4Å: Chain O: H.114 Chain T: H.114, S.118, P.123, C.126 Ligands: PLL.175, PLL.234, PLL.259 4 PLIP interactions: 1 interactions with chain T, 3 Ligand-Water interactions Metal complexes: T:C.126, H2O.104, H2O.139, H2O.153 PLL.245: 6 residues within 4Å: Chain U: D.38, C.48, H.49, R.52 Ligands: PD.243, PD.244 1 PLIP interactions: 1 interactions with chain U Metal complexes: U:C.48 PLL.246: 10 residues within 4Å: Chain M: P.123, C.126, D.127 Chain U: H.114, C.126, E.130, L.134 Ligands: PLL.150, PLL.198, PLL.247 2 PLIP interactions: 2 interactions with chain U Metal complexes: U:H.114, U:C.126 PLL.247: 8 residues within 4Å: Chain Q: H.114 Chain U: H.114, S.118, P.123, C.126 Ligands: PLL.151, PLL.199, PLL.246 4 PLIP interactions: 1 interactions with chain U, 3 Ligand-Water interactions Metal complexes: U:C.126, H2O.89, H2O.118, H2O.146 PLL.257: 6 residues within 4Å: Chain V: D.38, C.48, H.49, R.52 Ligands: PD.255, PD.256 1 PLIP interactions: 1 interactions with chain V Metal complexes: V:C.48 PLL.258: 10 residues within 4Å: Chain O: P.123, C.126, D.127 Chain V: H.114, C.126, E.130, L.134 Ligands: PLL.174, PLL.234, PLL.259 2 PLIP interactions: 2 interactions with chain V Metal complexes: V:H.114, V:C.126 PLL.259: 8 residues within 4Å: Chain T: H.114 Chain V: H.114, S.118, P.123, C.126 Ligands: PLL.175, PLL.235, PLL.258 4 PLIP interactions: 1 interactions with chain V, 3 Ligand-Water interactions Metal complexes: V:C.126, H2O.104, H2O.139, H2O.153 PLL.269: 6 residues within 4Å: Chain W: D.38, C.48, H.49, R.52 Ligands: PD.267, PD.268 1 PLIP interactions: 1 interactions with chain W Metal complexes: W:C.48 PLL.270: 10 residues within 4Å: Chain P: P.123, C.126, D.127 Chain W: H.114, C.126, E.130, L.134 Ligands: PLL.186, PLL.210, PLL.271 2 PLIP interactions: 2 interactions with chain W Metal complexes: W:H.114, W:C.126 PLL.271: 8 residues within 4Å: Chain R: H.114 Chain W: H.114, S.118, P.123, C.126 Ligands: PLL.187, PLL.211, PLL.270 4 PLIP interactions: 1 interactions with chain W, 3 Ligand-Water interactions Metal complexes: W:C.126, H2O.111, H2O.125, H2O.160 PLL.281: 6 residues within 4Å: Chain X: D.38, C.48, H.49, R.52 Ligands: PD.279, PD.280 1 PLIP interactions: 1 interactions with chain X Metal complexes: X:C.48 PLL.282: 10 residues within 4Å: Chain N: P.123, C.126, D.127 Chain X: H.114, C.126, E.130, L.134 Ligands: PLL.162, PLL.222, PLL.283 2 PLIP interactions: 2 interactions with chain X Metal complexes: X:H.114, X:C.126 PLL.283: 8 residues within 4Å: Chain S: H.114 Chain X: H.114, S.118, P.123, C.126 Ligands: PLL.163, PLL.223, PLL.282 4 PLIP interactions: 1 interactions with chain X, 3 Ligand-Water interactions Metal complexes: X:C.126, H2O.97, H2O.132, H2O.167

120 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.8: 6 residues within 4Å: Chain A: Y.36, D.41, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.9: 4 residues within 4Å: Chain A: T.10, E.11, A.14, R.18 Ligand excluded by PLIP EDO.10: 7 residues within 4Å: Chain A: I.151, L.154, V.155, A.159, G.162, E.163, F.166 Ligand excluded by PLIP EDO.11: 3 residues within 4Å: Chain A: K.143, D.146 Chain W: E.45 Ligand excluded by PLIP EDO.12: 2 residues within 4Å: Chain A: S.85, Q.86 Ligand excluded by PLIP EDO.20: 6 residues within 4Å: Chain B: Y.36, D.41, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.21: 4 residues within 4Å: Chain B: T.10, E.11, A.14, R.18 Ligand excluded by PLIP EDO.22: 7 residues within 4Å: Chain B: I.151, L.154, V.155, A.159, G.162, E.163, F.166 Ligand excluded by PLIP EDO.23: 3 residues within 4Å: Chain B: K.143, D.146 Chain V: E.45 Ligand excluded by PLIP EDO.24: 2 residues within 4Å: Chain B: S.85, Q.86 Ligand excluded by PLIP EDO.32: 6 residues within 4Å: Chain C: Y.36, D.41, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.33: 4 residues within 4Å: Chain C: T.10, E.11, A.14, R.18 Ligand excluded by PLIP EDO.34: 7 residues within 4Å: Chain C: I.151, L.154, V.155, A.159, G.162, E.163, F.166 Ligand excluded by PLIP EDO.35: 3 residues within 4Å: Chain C: K.143, D.146 Chain U: E.45 Ligand excluded by PLIP EDO.36: 2 residues within 4Å: Chain C: S.85, Q.86 Ligand excluded by PLIP EDO.44: 6 residues within 4Å: Chain D: Y.36, D.41, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.45: 4 residues within 4Å: Chain D: T.10, E.11, A.14, R.18 Ligand excluded by PLIP EDO.46: 7 residues within 4Å: Chain D: I.151, L.154, V.155, A.159, G.162, E.163, F.166 Ligand excluded by PLIP EDO.47: 3 residues within 4Å: Chain D: K.143, D.146 Chain X: E.45 Ligand excluded by PLIP EDO.48: 2 residues within 4Å: Chain D: S.85, Q.86 Ligand excluded by PLIP EDO.56: 6 residues within 4Å: Chain E: Y.36, D.41, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.57: 4 residues within 4Å: Chain E: T.10, E.11, A.14, R.18 Ligand excluded by PLIP EDO.58: 7 residues within 4Å: Chain E: I.151, L.154, V.155, A.159, G.162, E.163, F.166 Ligand excluded by PLIP EDO.59: 3 residues within 4Å: Chain E: K.143, D.146 Chain T: E.45 Ligand excluded by PLIP EDO.60: 2 residues within 4Å: Chain E: S.85, Q.86 Ligand excluded by PLIP EDO.68: 6 residues within 4Å: Chain F: Y.36, D.41, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.69: 4 residues within 4Å: Chain F: T.10, E.11, A.14, R.18 Ligand excluded by PLIP EDO.70: 7 residues within 4Å: Chain F: I.151, L.154, V.155, A.159, G.162, E.163, F.166 Ligand excluded by PLIP EDO.71: 3 residues within 4Å: Chain F: K.143, D.146 Chain Q: E.45 Ligand excluded by PLIP EDO.72: 2 residues within 4Å: Chain F: S.85, Q.86 Ligand excluded by PLIP EDO.80: 6 residues within 4Å: Chain G: Y.36, D.41, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.81: 4 residues within 4Å: Chain G: T.10, E.11, A.14, R.18 Ligand excluded by PLIP EDO.82: 7 residues within 4Å: Chain G: I.151, L.154, V.155, A.159, G.162, E.163, F.166 Ligand excluded by PLIP EDO.83: 3 residues within 4Å: Chain G: K.143, D.146 Chain R: E.45 Ligand excluded by PLIP EDO.84: 2 residues within 4Å: Chain G: S.85, Q.86 Ligand excluded by PLIP EDO.92: 6 residues within 4Å: Chain H: Y.36, D.41, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.93: 4 residues within 4Å: Chain H: T.10, E.11, A.14, R.18 Ligand excluded by PLIP EDO.94: 7 residues within 4Å: Chain H: I.151, L.154, V.155, A.159, G.162, E.163, F.166 Ligand excluded by PLIP EDO.95: 3 residues within 4Å: Chain H: K.143, D.146 Chain S: E.45 Ligand excluded by PLIP EDO.96: 2 residues within 4Å: Chain H: S.85, Q.86 Ligand excluded by PLIP EDO.104: 6 residues within 4Å: Chain I: Y.36, D.41, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.105: 4 residues within 4Å: Chain I: T.10, E.11, A.14, R.18 Ligand excluded by PLIP EDO.106: 7 residues within 4Å: Chain I: I.151, L.154, V.155, A.159, G.162, E.163, F.166 Ligand excluded by PLIP EDO.107: 3 residues within 4Å: Chain I: K.143, D.146 Chain M: E.45 Ligand excluded by PLIP EDO.108: 2 residues within 4Å: Chain I: S.85, Q.86 Ligand excluded by PLIP EDO.116: 6 residues within 4Å: Chain J: Y.36, D.41, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.117: 4 residues within 4Å: Chain J: T.10, E.11, A.14, R.18 Ligand excluded by PLIP EDO.118: 7 residues within 4Å: Chain J: I.151, L.154, V.155, A.159, G.162, E.163, F.166 Ligand excluded by PLIP EDO.119: 3 residues within 4Å: Chain J: K.143, D.146 Chain P: E.45 Ligand excluded by PLIP EDO.120: 2 residues within 4Å: Chain J: S.85, Q.86 Ligand excluded by PLIP EDO.128: 6 residues within 4Å: Chain K: Y.36, D.41, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.129: 4 residues within 4Å: Chain K: T.10, E.11, A.14, R.18 Ligand excluded by PLIP EDO.130: 7 residues within 4Å: Chain K: I.151, L.154, V.155, A.159, G.162, E.163, F.166 Ligand excluded by PLIP EDO.131: 3 residues within 4Å: Chain K: K.143, D.146 Chain O: E.45 Ligand excluded by PLIP EDO.132: 2 residues within 4Å: Chain K: S.85, Q.86 Ligand excluded by PLIP EDO.140: 6 residues within 4Å: Chain L: Y.36, D.41, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.141: 4 residues within 4Å: Chain L: T.10, E.11, A.14, R.18 Ligand excluded by PLIP EDO.142: 7 residues within 4Å: Chain L: I.151, L.154, V.155, A.159, G.162, E.163, F.166 Ligand excluded by PLIP EDO.143: 3 residues within 4Å: Chain L: K.143, D.146 Chain N: E.45 Ligand excluded by PLIP EDO.144: 2 residues within 4Å: Chain L: S.85, Q.86 Ligand excluded by PLIP EDO.152: 6 residues within 4Å: Chain M: Y.36, D.41, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.153: 4 residues within 4Å: Chain M: T.10, E.11, A.14, R.18 Ligand excluded by PLIP EDO.154: 7 residues within 4Å: Chain M: I.151, L.154, V.155, A.159, G.162, E.163, F.166 Ligand excluded by PLIP EDO.155: 3 residues within 4Å: Chain K: E.45 Chain M: K.143, D.146 Ligand excluded by PLIP EDO.156: 2 residues within 4Å: Chain M: S.85, Q.86 Ligand excluded by PLIP EDO.164: 6 residues within 4Å: Chain N: Y.36, D.41, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.165: 4 residues within 4Å: Chain N: T.10, E.11, A.14, R.18 Ligand excluded by PLIP EDO.166: 7 residues within 4Å: Chain N: I.151, L.154, V.155, A.159, G.162, E.163, F.166 Ligand excluded by PLIP EDO.167: 3 residues within 4Å: Chain J: E.45 Chain N: K.143, D.146 Ligand excluded by PLIP EDO.168: 2 residues within 4Å: Chain N: S.85, Q.86 Ligand excluded by PLIP EDO.176: 6 residues within 4Å: Chain O: Y.36, D.41, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.177: 4 residues within 4Å: Chain O: T.10, E.11, A.14, R.18 Ligand excluded by PLIP EDO.178: 7 residues within 4Å: Chain O: I.151, L.154, V.155, A.159, G.162, E.163, F.166 Ligand excluded by PLIP EDO.179: 3 residues within 4Å: Chain I: E.45 Chain O: K.143, D.146 Ligand excluded by PLIP EDO.180: 2 residues within 4Å: Chain O: S.85, Q.86 Ligand excluded by PLIP EDO.188: 6 residues within 4Å: Chain P: Y.36, D.41, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.189: 4 residues within 4Å: Chain P: T.10, E.11, A.14, R.18 Ligand excluded by PLIP EDO.190: 7 residues within 4Å: Chain P: I.151, L.154, V.155, A.159, G.162, E.163, F.166 Ligand excluded by PLIP EDO.191: 3 residues within 4Å: Chain L: E.45 Chain P: K.143, D.146 Ligand excluded by PLIP EDO.192: 2 residues within 4Å: Chain P: S.85, Q.86 Ligand excluded by PLIP EDO.200: 6 residues within 4Å: Chain Q: Y.36, D.41, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.201: 4 residues within 4Å: Chain Q: T.10, E.11, A.14, R.18 Ligand excluded by PLIP EDO.202: 7 residues within 4Å: Chain Q: I.151, L.154, V.155, A.159, G.162, E.163, F.166 Ligand excluded by PLIP EDO.203: 3 residues within 4Å: Chain H: E.45 Chain Q: K.143, D.146 Ligand excluded by PLIP EDO.204: 2 residues within 4Å: Chain Q: S.85, Q.86 Ligand excluded by PLIP EDO.212: 6 residues within 4Å: Chain R: Y.36, D.41, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.213: 4 residues within 4Å: Chain R: T.10, E.11, A.14, R.18 Ligand excluded by PLIP EDO.214: 7 residues within 4Å: Chain R: I.151, L.154, V.155, A.159, G.162, E.163, F.166 Ligand excluded by PLIP EDO.215: 3 residues within 4Å: Chain E: E.45 Chain R: K.143, D.146 Ligand excluded by PLIP EDO.216: 2 residues within 4Å: Chain R: S.85, Q.86 Ligand excluded by PLIP EDO.224: 6 residues within 4Å: Chain S: Y.36, D.41, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.225: 4 residues within 4Å: Chain S: T.10, E.11, A.14, R.18 Ligand excluded by PLIP EDO.226: 7 residues within 4Å: Chain S: I.151, L.154, V.155, A.159, G.162, E.163, F.166 Ligand excluded by PLIP EDO.227: 3 residues within 4Å: Chain F: E.45 Chain S: K.143, D.146 Ligand excluded by PLIP EDO.228: 2 residues within 4Å: Chain S: S.85, Q.86 Ligand excluded by PLIP EDO.236: 6 residues within 4Å: Chain T: Y.36, D.41, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.237: 4 residues within 4Å: Chain T: T.10, E.11, A.14, R.18 Ligand excluded by PLIP EDO.238: 7 residues within 4Å: Chain T: I.151, L.154, V.155, A.159, G.162, E.163, F.166 Ligand excluded by PLIP EDO.239: 3 residues within 4Å: Chain G: E.45 Chain T: K.143, D.146 Ligand excluded by PLIP EDO.240: 2 residues within 4Å: Chain T: S.85, Q.86 Ligand excluded by PLIP EDO.248: 6 residues within 4Å: Chain U: Y.36, D.41, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.249: 4 residues within 4Å: Chain U: T.10, E.11, A.14, R.18 Ligand excluded by PLIP EDO.250: 7 residues within 4Å: Chain U: I.151, L.154, V.155, A.159, G.162, E.163, F.166 Ligand excluded by PLIP EDO.251: 3 residues within 4Å: Chain A: E.45 Chain U: K.143, D.146 Ligand excluded by PLIP EDO.252: 2 residues within 4Å: Chain U: S.85, Q.86 Ligand excluded by PLIP EDO.260: 6 residues within 4Å: Chain V: Y.36, D.41, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.261: 4 residues within 4Å: Chain V: T.10, E.11, A.14, R.18 Ligand excluded by PLIP EDO.262: 7 residues within 4Å: Chain V: I.151, L.154, V.155, A.159, G.162, E.163, F.166 Ligand excluded by PLIP EDO.263: 3 residues within 4Å: Chain D: E.45 Chain V: K.143, D.146 Ligand excluded by PLIP EDO.264: 2 residues within 4Å: Chain V: S.85, Q.86 Ligand excluded by PLIP EDO.272: 6 residues within 4Å: Chain W: Y.36, D.41, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.273: 4 residues within 4Å: Chain W: T.10, E.11, A.14, R.18 Ligand excluded by PLIP EDO.274: 7 residues within 4Å: Chain W: I.151, L.154, V.155, A.159, G.162, E.163, F.166 Ligand excluded by PLIP EDO.275: 3 residues within 4Å: Chain C: E.45 Chain W: K.143, D.146 Ligand excluded by PLIP EDO.276: 2 residues within 4Å: Chain W: S.85, Q.86 Ligand excluded by PLIP EDO.284: 6 residues within 4Å: Chain X: Y.36, D.41, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.285: 4 residues within 4Å: Chain X: T.10, E.11, A.14, R.18 Ligand excluded by PLIP EDO.286: 7 residues within 4Å: Chain X: I.151, L.154, V.155, A.159, G.162, E.163, F.166 Ligand excluded by PLIP EDO.287: 3 residues within 4Å: Chain B: E.45 Chain X: K.143, D.146 Ligand excluded by PLIP EDO.288: 2 residues within 4Å: Chain X: S.85, Q.86 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abe, S. et al., Mechanism of Accumulation and Incorporation of Organometallic Pd Complexes into the Protein Nanocage of apo-Ferritin. Inorg.Chem. (2010)

Release Date

2010-08-11

Peptides

Ferritin light chain: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

B
X

C
X

D
X

E
X

F
X

G
X

H
X

I
X

J
X

K
X

L
X

M
X

N
X

O
X

P
X

Q
X

R
X

S
X

T
X

U
X

V
X

W
X

X
X

Ferritin light chain

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