SMTL ID : 3aha.1

Crystal structure of the complex between gp41 fragments N36 and C34 mutant N126K/E137Q

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-3-3-mer

Ligands

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 4 residues within 4Å: Chain B: E.28, E.31, Q.32, L.35 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:E.31, B:L.35 Hydrogen bonds: B:E.28 Water bridges: B:Q.32

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 6 residues within 4Å: Chain A: Q.8, L.11 Chain C: Q.8, L.11 Chain E: Q.8, L.11 Ligand excluded by PLIP CL.3: 1 residues within 4Å: Chain D: W.2 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Izumi, K. et al., Characterization of HIV-1 resistance to a fusion inhibitor, N36, derived from the gp41 amino terminal heptad repeat. Antiviral Res. (2010)

Release Date

2010-05-19

Peptides

Transmembrane protein gp41: ACE
Transmembrane protein gp41: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

Transmembrane protein gp41

Transmembrane protein gp41

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