SMTL ID : 3ak1.1

Superoxide dismutase from Aeropyrum pernix K1, apo-form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.57 Å

Oligo State

homo-tetramer

Ligands

26 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: P.11, L.12, Y.14, N.15, Y.16, H.32 Ligand excluded by PLIP EDO.2: 2 residues within 4Å: Chain A: E.20, P.21 Ligand excluded by PLIP EDO.3: 2 residues within 4Å: Chain A: N.15, N.17 Ligand excluded by PLIP EDO.4: 8 residues within 4Å: Chain A: I.23, I.27, M.28, H.31, F.82, W.83, A.170, Y.182 Ligand excluded by PLIP EDO.5: 4 residues within 4Å: Chain A: K.34, H.35, T.38 Chain C: N.177 Ligand excluded by PLIP EDO.6: 7 residues within 4Å: Chain A: F.4, L.47, I.50, E.51, L.54 Chain B: Q.107, R.143 Ligand excluded by PLIP EDO.7: 5 residues within 4Å: Chain A: H.53, V.62 Chain B: A.116, L.117, A.120 Ligand excluded by PLIP EDO.8: 4 residues within 4Å: Chain A: R.143, I.144 Chain B: L.47, F.69 Ligand excluded by PLIP EDO.9: 6 residues within 4Å: Chain A: V.125, G.127, E.168, R.179 Chain C: F.71, W.167 Ligand excluded by PLIP EDO.10: 6 residues within 4Å: Chain B: P.11, L.12, Y.14, N.15, Y.16, H.32 Ligand excluded by PLIP EDO.11: 5 residues within 4Å: Chain B: P.21, Y.22, Y.175, N.185 Ligands: EDO.12 Ligand excluded by PLIP EDO.12: 3 residues within 4Å: Chain B: Q.174, Y.175 Ligands: EDO.11 Ligand excluded by PLIP EDO.13: 6 residues within 4Å: Chain B: D.61, A.64, V.65, D.68 Chain C: D.61, A.64 Ligand excluded by PLIP EDO.14: 6 residues within 4Å: Chain B: E.148, K.149, V.152 Chain D: E.148, K.149, V.152 Ligand excluded by PLIP EDO.15: 6 residues within 4Å: Chain B: V.125, E.126, G.127, E.168, R.179 Chain D: W.167 Ligand excluded by PLIP EDO.16: 7 residues within 4Å: Chain A: E.148, K.149, V.152 Chain C: E.148, K.149, V.152 Ligands: EDO.19 Ligand excluded by PLIP EDO.17: 6 residues within 4Å: Chain B: A.64, R.67, D.68 Chain C: A.64, R.67, D.68 Ligand excluded by PLIP EDO.18: 6 residues within 4Å: Chain C: Q.107, F.108, L.142, R.143 Chain D: L.47, L.54 Ligand excluded by PLIP EDO.19: 8 residues within 4Å: Chain A: V.128, K.149 Chain C: E.126, G.127, V.128, E.148, K.149 Ligands: EDO.16 Ligand excluded by PLIP EDO.20: 5 residues within 4Å: Chain C: Y.7, E.8, H.76 Chain D: L.138, L.211 Ligand excluded by PLIP EDO.21: 6 residues within 4Å: Chain D: P.11, L.12, Y.14, N.15, Y.16, H.32 Ligand excluded by PLIP EDO.22: 4 residues within 4Å: Chain B: N.177 Chain D: K.34, H.35, T.38 Ligand excluded by PLIP EDO.23: 2 residues within 4Å: Chain D: K.55, E.57 Ligand excluded by PLIP EDO.24: 6 residues within 4Å: Chain D: P.96, G.97, G.98, W.192, D.193, E.196 Ligand excluded by PLIP EDO.25: 5 residues within 4Å: Chain B: H.35 Chain D: E.168, Y.171, Y.172, N.177 Ligand excluded by PLIP EDO.26: 4 residues within 4Å: Chain D: G.56, E.57, I.58, Q.59 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakamura, T. et al., Crystal structure of the cambialistic superoxide dismutase from Aeropyrum pernix K1 - insights into the enzyme mechanism and stability. Febs J. (2011)

Release Date

2011-02-02

Peptides

Superoxide dismutase [Mn/Fe]: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Superoxide dismutase [Mn/Fe]

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