SMTL ID : 3ake.1

Crystal structure of CMP kinase in complex with CMP from Thermus thermophilus HB8

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x C5P: CYTIDINE-5'-MONOPHOSPHATE(Non-covalent)

C5P.1: 13 residues within 4Å: Chain A: S.11, K.15, S.33, G.34, Y.37, R.38, V.97, A.101, R.107, G.125, R.126, D.127, M.128 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:R.126 Hydrogen bonds: A:S.33, A:R.107, A:R.107, A:R.126, A:R.126, A:D.127, A:D.127 Water bridges: A:S.16, A:S.16, A:Y.37, A:R.153, A:R.153, A:R.153, A:R.153 Salt bridges: A:K.15, A:R.38, A:R.126 pi-Stacking: A:Y.37

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: A.12, S.13, G.14, K.15, S.16 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mega, R. et al., The crystal structure of the tertiary complex of CMP kinase with a phosphoryl group acceptor and a donor from Thermus thermophilus HB8. To be Published

Release Date

2011-07-06

Peptides

Cytidylate kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytidylate kinase

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