SMTL ID : 3all.1 (1 other biounit)

Crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase, mutant Y270A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 28 residues within 4Å: Chain A: G.18, G.19, G.20, F.21, A.22, H.40, E.41, K.42, I.53, Y.54, R.106, S.128, E.129, A.130, A.155, D.156, G.157, L.179, R.181, G.287, D.288, P.295, A.298, Q.299, G.300, A.301, G.302 Ligands: GOL.5 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:L.179, A:P.295, A:P.295 Hydrogen bonds: A:G.19, A:A.22, A:K.42, A:Y.54, A:Y.54, A:R.106, A:R.106, A:A.130, A:A.130, A:D.156, A:D.288, A:G.300, A:A.301, A:G.302 Water bridges: A:G.19, A:G.20, A:G.23, A:G.157, A:V.158, A:K.161, A:D.288, A:D.288, A:D.288, A:A.289, A:Q.299 pi-Cation interactions: A:R.106

1 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.2: 6 residues within 4Å: Chain A: W.173, S.175, A.270, T.272, C.294, A.347 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.176

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: L.73, Q.74, G.75, S.76, N.218, E.219 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.75, A:E.219, A:E.219 GOL.4: 5 residues within 4Å: Chain A: S.277, T.279, R.280, G.281, V.326 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.277, A:G.281 Water bridges: A:S.277, A:R.280 GOL.5: 8 residues within 4Å: Chain A: Y.54, L.179, L.213, Y.223, M.227, P.295, A.298 Ligands: FAD.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.223, A:A.298 Water bridges: A:R.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kobayashi, J. et al., Crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase. To be published

Release Date

2011-08-10

Peptides

2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase

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