- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FRU- GLC- GLA: alpha-D-galactopyranose-(1-6)-alpha-D-glucopyranose-(1-2)-beta-D-fructofuranose(Non-covalent)(Non-functional Binders)
- 9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.5: 5 residues within 4Å:- Chain A: N.116, V.137, Y.138, N.141
- Ligands: FRU-GLC-GLA.1
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Y.138
- Water bridges: A:N.116, A:N.141, A:N.141
EDO.6: 4 residues within 4Å:- Chain A: A.80, P.81, Q.82, F.143
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.82, A:Q.82
EDO.8: 2 residues within 4Å:- Chain B: Y.138, N.141
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.141
EDO.10: 6 residues within 4Å:- Chain A: C.41, S.42
- Chain C: H.55, S.102, S.103, D.105
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:S.103, C:D.105
EDO.11: 6 residues within 4Å:- Chain C: S.70, L.71, P.72, D.73
- Chain D: S.70, L.74
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:D.73, C:D.73, D:S.70
EDO.12: 5 residues within 4Å:- Chain C: Q.82, V.137, N.141, F.143
- Ligands: FRU-GLC-GLA.3
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:N.141
EDO.13: 4 residues within 4Å:- Chain C: N.115, N.116, Y.138
- Ligands: FRU-GLC-GLA.3
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:N.115
EDO.15: 6 residues within 4Å:- Chain D: N.116, D.136, V.137, Y.138, N.141
- Ligands: FRU-GLC-GLA.4
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:Y.138, D:N.141, D:N.141
EDO.16: 4 residues within 4Å:- Chain D: A.80, P.81, Q.82, F.143
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:Q.82, D:Q.82
- 4 x CA: CALCIUM ION(Non-covalent)
CA.7: 5 residues within 4Å:- Chain A: E.113, N.115, N.116, D.136
- Ligands: FRU-GLC-GLA.1
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:E.113, A:D.136, A:D.136
CA.9: 5 residues within 4Å:- Chain B: E.113, N.115, N.116, D.136
- Ligands: FRU-GLC-GLA.2
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:E.113, B:D.136, B:D.136
CA.14: 5 residues within 4Å:- Chain C: E.113, N.115, N.116, D.136
- Ligands: FRU-GLC-GLA.3
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:E.113, C:D.136, C:D.136
CA.17: 5 residues within 4Å:- Chain D: E.113, N.115, N.116, D.136
- Ligands: FRU-GLC-GLA.4
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:E.113, D:D.136, D:D.136
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hatakeyama, T. et al., Galactose recognition by a tetrameric C-type lectin, CEL-IV, containing the EPN carbohydrate recognition motif. J.Biol.Chem. (2011)
- Release Date
- 2011-01-19
- Peptides
- Lectin CEL-IV, C-type: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FRU- GLC- GLA: alpha-D-galactopyranose-(1-6)-alpha-D-glucopyranose-(1-2)-beta-D-fructofuranose(Non-covalent)(Non-functional Binders)
- 9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 4 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hatakeyama, T. et al., Galactose recognition by a tetrameric C-type lectin, CEL-IV, containing the EPN carbohydrate recognition motif. J.Biol.Chem. (2011)
- Release Date
- 2011-01-19
- Peptides
- Lectin CEL-IV, C-type: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D