SMTL ID : 3apg.1

Crystal structure of hyperthermophilic beta-glucosidase from pyrococcus furiosus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-tetramer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: Q.18, H.151, W.152, N.207, E.208, E.373, W.411, E.418, W.419 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.18, A:H.151, A:N.207, A:N.207, A:N.306, A:E.418 GOL.2: 9 residues within 4Å: Chain B: Q.18, H.151, N.207, E.208, N.306, E.373, W.411, E.418, W.419 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:Q.18, B:Q.18, B:N.207, B:E.208, B:N.306, B:E.418 Water bridges: B:E.418 GOL.3: 3 residues within 4Å: Chain B: E.129, R.132, S.136 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:E.129, B:E.129, B:R.132, B:S.136 Water bridges: B:S.136 GOL.4: 9 residues within 4Å: Chain C: Q.18, H.151, N.207, E.208, N.306, E.373, W.411, E.418, W.419 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:Q.18, C:Q.18, C:N.207, C:E.208, C:N.306, C:E.418 GOL.5: 9 residues within 4Å: Chain D: Q.18, H.151, N.207, E.208, Y.308, E.373, W.411, E.418, W.419 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:Q.18, D:H.151, D:N.207, D:E.208, D:N.306, D:E.418 Water bridges: D:E.418

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kado, Y. et al., Crystal structure of hyperthermophilic beta-glucosidase from pyrococcus furiosus. TO BE PUBLISHED

Release Date

2011-10-19

Peptides

Beta-glucosidase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Beta-glucosidase