SMTL ID : 3aqj.1 (1 other biounit)

Crystal Structure of a C-terminal domain of the bacteriophage P2 tail spike protein, gpV

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.27 Å

Oligo State

homo-trimer

Ligands

1 x FE2: FE (II) ION(Non-covalent)

FE2.1: 6 residues within 4Å: Chain A: H.120, H.122 Chain B: H.120, H.122 Chain C: H.120, H.122 6 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A, 2 interactions with chain C Metal complexes: B:H.120, B:H.122, A:H.120, A:H.122, C:H.120, C:H.122

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 7 residues within 4Å: Chain A: G.124, D.125 Chain B: G.124, D.125 Chain C: G.124, D.125 Ligands: CA.3 Ligand excluded by PLIP

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 7 residues within 4Å: Chain A: D.125, S.126 Chain B: D.125, S.126 Chain C: D.125, S.126 Ligands: CL.2 5 PLIP interactions: 1 interactions with chain C, 2 interactions with chain A, 2 interactions with chain B Metal complexes: C:S.126, A:D.125, A:S.126, B:D.125, B:S.126

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamashita, E. et al., The host-binding domain of the P2 phage tail spike reveals a trimeric iron-binding structure. Acta Crystallogr.,Sect.F (2011)

Release Date

2011-08-10

Peptides

Baseplate assembly protein V: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Baseplate assembly protein V

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