SMTL ID : 3aux.1

Crystal structure of Rad50 bound to ADP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 16 residues within 4Å: Chain A: K.14, S.15, N.34, G.35, S.36, G.37, K.38, S.39, S.40, D.59, T.60, I.62, T.63, K.64, K.360 Ligands: MG.2 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:G.35, A:S.36, A:G.37, A:K.38, A:S.39, A:T.60, A:K.64, A:K.360 Water bridges: A:N.34, A:K.38, A:K.38, A:D.312 Salt bridges: A:K.38 ADP.4: 16 residues within 4Å: Chain B: K.14, S.15, N.34, G.35, S.36, G.37, K.38, S.39, S.40, D.59, T.60, I.62, T.63, K.64, K.360 Ligands: MG.5 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:G.35, B:S.36, B:G.37, B:K.38, B:S.39, B:T.60, B:T.63, B:K.64, B:K.360 Water bridges: B:N.34, B:K.38, B:K.38, B:D.312 Salt bridges: B:K.38

4 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: S.39, D.312 Ligands: ADP.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:S.39, H2O.1, H2O.1, H2O.1, H2O.1 MG.3: 5 residues within 4Å: Chain A: E.313, P.314, T.315, T.343, L.348 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:T.315 MG.5: 3 residues within 4Å: Chain B: S.39, D.312 Ligands: ADP.4 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:S.39, H2O.2, H2O.2, H2O.2, H2O.3 MG.6: 5 residues within 4Å: Chain B: E.313, P.314, T.315, T.343, L.348 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:T.315

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lim, H.S. et al., Crystal Structure of the Mre11-Rad50-ATP S Complex:Understanding the Interplay between Mre11 and Rad50. To be Published

Release Date

2011-05-25

Peptides

DNA double-strand break repair rad50 ATPase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

DNA double-strand break repair rad50 ATPase

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