SMTL ID : 3auy.1

Crystal structure of Rad50 bound to ADP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 18 residues within 4Å: Chain A: K.14, S.15, E.33, N.34, G.35, S.36, G.37, K.38, S.39, S.40, D.59, T.60, I.62, T.63, K.64, K.360, N.363 Ligands: MG.2 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:E.33, A:G.35, A:G.35, A:S.36, A:G.37, A:K.38, A:S.39, A:S.40, A:I.62, A:K.64, A:K.360, A:N.363 Water bridges: A:S.39 Salt bridges: A:K.38 pi-Cation interactions: A:K.64, A:K.64 ADP.3: 15 residues within 4Å: Chain B: K.14, S.15, E.33, G.35, S.36, G.37, K.38, S.39, S.40, T.60, I.62, T.63, K.64, K.360 Ligands: MG.4 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:G.35, B:G.35, B:S.36, B:G.37, B:K.38, B:S.39, B:S.40, B:I.62, B:K.64 Water bridges: B:S.39 Salt bridges: B:K.38 pi-Cation interactions: B:K.64, B:K.64

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: S.39, D.312, E.313 Ligands: ADP.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.39, A:E.313, H2O.1, H2O.2 MG.4: 4 residues within 4Å: Chain B: S.39, D.312, E.313 Ligands: ADP.3 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:S.39, B:E.313, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lim, H.S. et al., Crystal Structure of the Mre11-Rad50-ATP S Complex: Understanding the Interplay between Mre11 and Rad50. To be Published

Release Date

2011-05-25

Peptides

DNA double-strand break repair rad50 ATPase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DNA double-strand break repair rad50 ATPase

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