SMTL ID : 3av0.1

Crystal structure of Mre11-Rad50 bound to ATP S

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-1-1-mer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: K.50, K.79, R.82 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.79, A:K.79, A:R.82, A:R.82 GOL.7: 2 residues within 4Å: Chain B: Y.317 Ligands: IPA.10 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Y.317 GOL.8: 5 residues within 4Å: Chain B: T.315, V.316, Y.317, H.344, H.345 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.317, B:H.344 GOL.9: 5 residues within 4Å: Chain B: D.59, T.63, K.64, G.65, K.66 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.64, B:K.64 Water bridges: B:D.59, B:D.59

3 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.2: 4 residues within 4Å: Chain A: D.128, Y.146, E.155, K.159 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.159, A:K.159 IPA.4: 5 residues within 4Å: Chain A: R.231 Chain B: S.250, E.251, D.253 Ligands: SO4.3 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.253 IPA.10: 2 residues within 4Å: Chain B: Q.134 Ligands: GOL.7 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.134, B:Q.134

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 7 residues within 4Å: Chain A: Q.35, Y.36, I.229, Y.230, R.231 Chain B: D.253 Ligands: IPA.4 5 PLIP interactions: 1 interactions with chain B, 4 interactions with chain A Salt bridges: B:K.325, A:R.231 Hydrogen bonds: A:Q.35, A:Y.36, A:R.231

1 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)

AGS.5: 17 residues within 4Å: Chain B: K.14, S.15, N.34, G.35, S.36, G.37, K.38, S.39, S.40, T.60, I.62, T.63, K.64, Q.134, E.313, K.360 Ligands: MG.6 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:S.15, B:N.34, B:G.35, B:G.35, B:G.37, B:K.38, B:S.39, B:S.39, B:S.39, B:S.40, B:K.64, B:K.64, B:K.64, B:Q.134, B:K.360 Salt bridges: B:K.38

1 x MG: MAGNESIUM ION(Non-covalent)

MG.6: 4 residues within 4Å: Chain B: S.39, Q.134, D.312 Ligands: AGS.5 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:S.39, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lim, H.S. et al., Crystal Structure of the Mre11-Rad50-ATP S Complex: Understanding the Interplay between Mre11 and Rad50. To be Published

Release Date

2011-05-25

Peptides

DNA double-strand break repair protein mre11: A
DNA double-strand break repair rad50 ATPase: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DNA double-strand break repair protein mre11

DNA double-strand break repair rad50 ATPase

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