SMTL ID : 3axz.1

Crystal structure of Haemophilus influenzae TrmD in complex with adenosine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-dimer

Ligands

2 x ADN: ADENOSINE(Non-covalent)

ADN.1: 18 residues within 4Å: Chain A: Y.106, L.107, S.108, P.109, G.133, Y.135, G.137, W.151, S.152, I.153, G.154, Y.156, V.157, L.158, T.159, G.160, G.161, P.164 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:Y.106, A:Y.106, A:G.133, A:G.133, A:Y.135, A:I.153, A:G.154, A:Y.156, A:L.158 Water bridges: A:L.107 ADN.2: 18 residues within 4Å: Chain B: Y.106, L.107, S.108, P.109, G.133, Y.135, G.137, W.151, S.152, I.153, G.154, Y.156, V.157, L.158, T.159, G.160, G.161, P.164 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:Y.106, B:G.133, B:G.133, B:Y.135, B:I.153, B:G.154, B:Y.156, B:L.158 Water bridges: B:Y.106, B:L.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lahoud, G. et al., Differentiating analogous tRNA methyltransferases by fragments of the methyl donor. Rna (2011)

Release Date

2011-08-17

Peptides

tRNA (guanine-N(1)-)-methyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

tRNA (guanine-N(1)-)-methyltransferase

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