SMTL ID : 3b9c.3 (2 other biounits)

Crystal Structure of Human GRP CRD

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: R.70, Q.82, S.83, A.84 Chain B: T.64 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.83, A:A.84, B:T.64 Water bridges: A:R.70 SO4.2: 6 residues within 4Å: Chain A: R.66, Y.87, F.88 Chain B: R.66, Y.87, F.88 7 PLIP interactions: 3 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:F.88, A:F.88 Water bridges: B:F.88, A:R.66, A:R.66 Salt bridges: B:R.66, A:R.66 SO4.5: 5 residues within 4Å: Chain A: T.64 Chain B: R.70, Q.82, S.83, A.84 8 PLIP interactions: 6 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:S.83, B:A.84, A:T.64 Water bridges: B:E.80, B:E.80, B:Q.82, B:S.83, A:T.64

4 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.3: 4 residues within 4Å: Chain A: K.25, E.99, L.101, F.110 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.99 BME.4: 4 residues within 4Å: Chain A: C.45, G.46, A.128, D.130 1 PLIP interactions: 1 interactions with chain A Water bridges: A:C.45 BME.6: 2 residues within 4Å: Chain B: A.128, D.130 No protein-ligand interaction detected (PLIP) BME.7: 2 residues within 4Å: Chain B: Y.104, Q.124 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.124

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, D. et al., Crystal structure of the C-terminal conserved domain of human GRP, a galectin-related protein, reveals a function mode different from those of galectins. Proteins (2008)

Release Date

2008-03-18

Peptides

HSPC159: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
C

HSPC159

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