SMTL ID : 3bde.1 (1 other biounit)

Crystal structure of a dabb family protein with a ferredoxin-like fold (mll5499) from mesorhizobium loti maff303099 at 1.79 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

homo-dimer

Ligands

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 6 residues within 4Å: Chain A: M.20, T.56, H.57, E.77, F.78, A.79 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:E.77 Hydrogen bonds: A:T.56, A:T.56 ACT.10: 6 residues within 4Å: Chain B: M.20, T.56, H.57, E.77, F.78, A.79 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:E.77 Hydrogen bonds: B:T.56

16 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: H.23, L.49, Y.87, H.93, V.97 Ligands: EDO.7 Ligand excluded by PLIP EDO.3: 4 residues within 4Å: Chain A: Q.81, Y.84, T.85, N.88 Ligand excluded by PLIP EDO.4: 2 residues within 4Å: Chain A: T.56, H.57 Ligand excluded by PLIP EDO.5: 3 residues within 4Å: Chain A: L.36, E.37, R.40 Ligand excluded by PLIP EDO.6: 1 residues within 4Å: Chain A: D.99 Ligand excluded by PLIP EDO.7: 6 residues within 4Å: Chain A: V.25, V.97, W.101, F.108, E.110 Ligands: EDO.2 Ligand excluded by PLIP EDO.8: 6 residues within 4Å: Chain A: T.24, I.111, Y.113 Chain B: T.24, Y.113 Ligands: EDO.17 Ligand excluded by PLIP EDO.9: 3 residues within 4Å: Chain A: N.88, H.93, V.94 Ligand excluded by PLIP EDO.11: 6 residues within 4Å: Chain B: H.23, L.49, Y.87, H.93, V.97 Ligands: EDO.16 Ligand excluded by PLIP EDO.12: 4 residues within 4Å: Chain B: Q.81, Y.84, T.85, N.88 Ligand excluded by PLIP EDO.13: 2 residues within 4Å: Chain B: T.56, H.57 Ligand excluded by PLIP EDO.14: 3 residues within 4Å: Chain B: L.36, E.37, R.40 Ligand excluded by PLIP EDO.15: 1 residues within 4Å: Chain B: D.99 Ligand excluded by PLIP EDO.16: 6 residues within 4Å: Chain B: V.25, V.97, W.101, F.108, E.110 Ligands: EDO.11 Ligand excluded by PLIP EDO.17: 6 residues within 4Å: Chain A: T.24, Y.113 Chain B: T.24, I.111, Y.113 Ligands: EDO.8 Ligand excluded by PLIP EDO.18: 3 residues within 4Å: Chain B: N.88, H.93, V.94 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of domain of unknown function with a ferredoxin-like fold (NP_106155.1) from Mesorhizobium loti at 1.79 A resolution. To be published

Release Date

2007-11-27

Peptides

Mll5499 protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Mll5499 protein

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