SMTL ID : 3bdx.2 (3 other biounits)

Crystal structure of the unstable and highly fibrillogenic Pro7Ser mutant of the Recombinant variable domain 6AJL2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 3 residues within 4Å: Chain A: V.100, V.101, F.102 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.102 Hydrogen bonds: A:F.102 ACT.2: 3 residues within 4Å: Chain A: P.45, T.46, T.47 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.47, A:T.47 ACT.3: 1 residues within 4Å: Chain A: H.99 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.99

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 3 residues within 4Å: Chain A: A.30, S.31, Y.33 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.30 GOL.5: 7 residues within 4Å: Chain A: S.9, D.88, Y.90, G.104, G.105, T.106, K.107 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.9, A:Y.90, A:K.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hernandez-Santoyo, A. et al., A single mutation at the sheet switch region results in conformational changes favoring lambda6 light-chain fibrillogenesis. J.Mol.Biol. (2010)

Release Date

2008-10-28

Peptides

Amyloid lambda 6 light chain variable region PIP (fragment): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Amyloid lambda 6 light chain variable region PIP (fragment)

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