SMTL ID : 3bea.1

cFMS tyrosine kinase (tie2 KID) in complex with a pyrimidinopyridone inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: Q.13, R.15, K.17, R.188 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.15, A:K.17, A:R.188 SO4.2: 3 residues within 4Å: Chain A: R.142, N.219, N.265 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.219, A:N.265 Water bridges: A:R.142 Salt bridges: A:R.142 SO4.3: 3 residues within 4Å: Chain A: K.61, K.85, S.86 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.86, A:S.86 Salt bridges: A:K.61

1 x IXH: 8-(2,3-dihydro-1H-inden-5-yl)-2-({4-[(3R,5S)-3,5-dimethylpiperazin-1-yl]phenyl}amino)-5-oxo-5,8-dihydropyrido[2,3-d]pyrimidine-6-carboxamide(Non-covalent)

IXH.4: 17 residues within 4Å: Chain A: L.54, G.55, V.62, A.80, K.82, V.113, T.129, E.130, Y.131, C.132, G.135, N.139, L.196, D.207, F.208, A.211, R.212 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.54, A:A.80, A:Y.131, A:L.196, A:F.208, A:A.211 Hydrogen bonds: A:K.82, A:T.129, A:T.129, A:C.132, A:C.132

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, H. et al., Design and synthesis of a pyrido[2,3-d]pyrimidin-5-one class of anti-inflammatory FMS inhibitors. Bioorg.Med.Chem.Lett. (2008)

Release Date

2008-07-15

Peptides

Macrophage colony-stimulating factor 1 receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Macrophage colony-stimulating factor 1 receptor