SMTL ID : 3bgc.1

HIV-1 protease in complex with a benzyl decorated oligoamine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

1 x LJH: N,N'-(iminodiethane-2,1-diyl)bis(4-amino-N-benzylbenzenesulfonamide)(Non-covalent)

LJH.1: 25 residues within 4Å: Chain A: D.25, G.27, A.28, D.30, V.32, I.47, G.48, I.50, L.76, T.80, V.82, I.84 Chain B: L.23, D.25, G.27, A.28, D.30, V.32, G.48, G.49, I.50, T.80, P.81, V.82, I.84 23 PLIP interactions: 12 interactions with chain A, 11 interactions with chain B Hydrophobic interactions: A:A.28, A:V.32, A:I.47, A:I.50, A:V.82, A:V.82, A:I.84, B:L.23, B:A.28, B:V.32, B:I.50, B:V.82, B:I.84, B:I.84 Hydrogen bonds: A:D.25, A:D.30, A:D.30, B:D.30, B:D.30, B:D.30, B:I.50 Water bridges: A:I.50, A:I.50

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain B: P.44 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain B: G.73, T.74, N.88 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Blum, A. et al., Achiral oligoamines as versatile tool for the development of aspartic protease inhibitors. Bioorg.Med.Chem. (2008)

Release Date

2008-09-02

Peptides

Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protease

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