SMTL ID : 3bjx.1 (1 other biounit)

Structure of a Group I haloacid dehalogenase from Pseudomonas putida strain PP3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 10 residues within 4Å: Chain A: W.49, A.51, F.52, F.125, N.129, A.202, S.203, D.204, F.283, I.284 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.49, A:F.52, A:S.203 Water bridges: A:G.53 SO4.2: 4 residues within 4Å: Chain A: R.244, E.245, R.248 Chain B: Y.197 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Y.197 Salt bridges: A:R.248 SO4.3: 3 residues within 4Å: Chain A: L.66, R.69, R.70 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.69, A:R.70 SO4.4: 5 residues within 4Å: Chain A: H.2, H.3, H.4, H.15, M.16 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.3, A:H.4 Salt bridges: A:H.4, A:H.15 SO4.5: 9 residues within 4Å: Chain B: W.49, A.51, F.52, R.55, N.129, A.202, S.203, D.204, F.283 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:F.52, B:S.203, B:S.203 Water bridges: B:G.53, B:G.53 SO4.6: 4 residues within 4Å: Chain B: R.104, A.107, A.108, K.213 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:A.107 Salt bridges: B:R.104, B:K.213 SO4.7: 4 residues within 4Å: Chain A: Y.197 Chain B: R.244, E.245, R.248 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Y.197, A:Y.197 Salt bridges: B:R.244, B:R.248

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schmidberger, J.W. et al., The crystal structure of DehI reveals a new alpha-haloacid dehalogenase fold and active-site mechanism. J.Mol.Biol. (2008)

Release Date

2008-04-01

Peptides

Halocarboxylic acid dehalogenase DehI: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Halocarboxylic acid dehalogenase DehI

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