SMTL ID : 3bn1.1 (1 other biounit)

Crystal structure of GDP-perosamine synthase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 5 residues within 4Å: Chain A: Q.215, R.233 Chain B: Y.88, F.185, K.188 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:Q.215, B:Y.88 Water bridges: A:R.233, B:Y.88 Salt bridges: A:R.233 Hydrophobic interactions: B:F.185

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 2 residues within 4Å: Chain A: E.296, L.298 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.298 Water bridges: A:L.298

1 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.3: 9 residues within 4Å: Chain A: Y.88, F.185, N.187, K.188, W.288, R.317 Chain B: Q.215, N.231, R.233 8 PLIP interactions: 6 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:Y.88, A:Y.88 Hydrogen bonds: A:N.187, B:Q.215 Water bridges: A:Y.88, A:Y.88 Salt bridges: A:R.317, B:R.233

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cook, P.D. et al., GDP-Perosamine Synthase: Structural Analysis and Production of a Novel Trideoxysugar. Biochemistry (2008)

Release Date

2008-03-18

Peptides

Perosamine synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Perosamine synthetase

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