SMTL ID : 3bnk.1

X-ray crystal structure of Flavoredoxin from Methanosarcina acetivorans

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 24 residues within 4Å: Chain A: N.30, M.32, A.33, L.34, G.35, W.36, G.50, V.51, N.52, H.55, Y.56, T.57, D.81, C.83, G.84, L.85, V.86, S.87, G.88, K.93, L.162, M.164, Y.169 Chain B: L.180 20 PLIP interactions: 19 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:A.33, A:L.162, A:Y.169, B:L.180 Hydrogen bonds: A:N.30, A:A.33, A:A.33, A:G.35, A:W.36, A:G.50, A:N.52, A:Y.56, A:T.57, A:G.84, A:S.87, A:G.88 Water bridges: A:N.52, A:G.84 Salt bridges: A:H.55, A:K.93 FMN.2: 23 residues within 4Å: Chain A: L.180 Chain B: N.30, M.32, A.33, L.34, G.35, W.36, G.50, V.51, N.52, H.55, Y.56, T.57, D.81, C.83, G.84, L.85, V.86, S.87, G.88, K.93, L.162, Y.169 20 PLIP interactions: 19 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:A.33, B:L.162, B:Y.169, A:L.180 Hydrogen bonds: B:N.30, B:A.33, B:A.33, B:G.35, B:W.36, B:G.50, B:N.52, B:Y.56, B:T.57, B:G.84, B:S.87, B:G.88 Water bridges: B:N.52, B:H.55, B:H.55 Salt bridges: B:K.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Suharti, S. et al., Structural and biochemical characterization of flavoredoxin from the archaeon Methanosarcina acetivorans. Biochemistry (2008)

Release Date

2008-10-28

Peptides

Flavoredoxin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Flavoredoxin