SMTL ID : 3bnm.1

Crystal structure of polyamine oxidase FMS1 from Saccharomyces cerevisiae in complex with bis-(3R,3'R)-methylated spermine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 38 residues within 4Å: Chain A: I.14, G.15, A.16, G.17, I.18, A.19, L.38, E.39, A.40, R.41, G.46, R.47, I.61, G.62, A.63, S.64, W.65, H.67, C.221, E.222, V.223, T.252, V.253, P.254, V.257, G.270, L.294, W.440, Y.445, A.449, Y.450, G.478, E.479, G.487, C.488, A.489, A.492 Ligands: SPJ.2 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:L.294, A:W.440, A:Y.450 Hydrogen bonds: A:A.16, A:A.19, A:A.40, A:R.41, A:R.47, A:S.64, A:W.65, A:W.65, A:V.223, A:V.223, A:E.479, A:G.487, A:G.487, A:A.489 Water bridges: A:G.20, A:H.67, A:Y.201 Salt bridges: A:R.47, A:R.47 pi-Stacking: A:Y.445 FAD.3: 39 residues within 4Å: Chain B: I.14, G.15, A.16, G.17, I.18, A.19, L.38, E.39, A.40, R.41, G.46, R.47, L.48, I.61, G.62, A.63, S.64, W.65, H.67, C.221, E.222, V.223, T.252, V.253, P.254, V.257, G.270, L.294, W.440, Y.445, A.449, Y.450, G.478, E.479, G.487, C.488, A.489, A.492 Ligands: SPJ.4 32 PLIP interactions: 32 interactions with chain B Hydrophobic interactions: B:L.294, B:W.440, B:A.449, B:Y.450 Hydrogen bonds: B:A.16, B:A.19, B:A.40, B:R.41, B:R.41, B:R.47, B:A.63, B:S.64, B:W.65, B:W.65, B:V.223, B:V.223, B:E.479, B:G.487, B:G.487, B:A.489 Water bridges: B:I.18, B:I.18, B:G.20, B:G.46, B:R.47, B:R.47, B:Y.201, B:Y.201, B:G.270 Salt bridges: B:R.47, B:R.47 pi-Stacking: B:Y.445

2 x SPJ: (3R,3'R)-N~1~,N~1~'-BUTANE-1,4-DIYLDIBUTANE-1,3-DIAMINE(Non-covalent)

SPJ.2: 14 residues within 4Å: Chain A: W.65, H.67, D.68, W.174, G.190, L.294, L.375, Y.450, G.485, A.486, G.487, C.488, Y.490 Ligands: FAD.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.65, A:L.375, A:Y.450 Hydrogen bonds: A:H.67, A:H.67, A:G.190 SPJ.4: 13 residues within 4Å: Chain B: W.65, H.67, L.173, W.174, N.195, K.312, F.359, L.375, Y.450, A.486, G.487, C.488 Ligands: FAD.3 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:W.65, B:W.174, B:W.174, B:F.359, B:Y.450 Hydrogen bonds: B:W.174, B:N.195, B:Y.450, B:A.486 Water bridges: B:N.195

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, Q. et al., Structural basis of the substrate stereospecificity of FMS1. To Be Published

Release Date

2008-01-29

Peptides

Polyamine oxidase FMS1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Polyamine oxidase FMS1

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