SMTL ID : 3bsa.1 (1 other biounit)

Crystal Structure of HCV NS5B Polymerase with a Novel Pyridazinone Inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x 1PD: 2-({3-[5-hydroxy-2-(3-methylbutyl)-3-oxo-6-(1,3-thiazol-5-yl)-2,3-dihydropyridazin-4-yl]-1,1-dioxido-2H-1,2,4-benzothia diazin-7-yl}oxy)acetamide(Non-covalent)

1PD.1: 20 residues within 4Å: Chain A: F.193, P.197, R.200, T.287, N.291, N.316, G.317, D.318, C.366, S.368, L.384, G.410, N.411, M.414, Y.415, Q.446, I.447, Y.448, G.449, S.556 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:P.197, A:N.316, A:Y.448, A:Y.448 Hydrogen bonds: A:N.291, A:D.318, A:D.318, A:Y.448, A:S.556 Water bridges: A:G.449, A:G.449, A:S.556 pi-Stacking: A:F.193

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, Y. et al., Novel HCV NS5B polymerase inhibitors derived from 4-(1',1'-dioxo-1',4'-dihydro-1'lambda6-benzo[1',2',4']thiadiazin-3'-yl)-5-hydroxy-2H-pyridazin-3-ones. Part 1: exploration of 7'-substitution of benzothiadiazine. Bioorg.Med.Chem.Lett. (2008)

Release Date

2008-12-23

Peptides

RNA-directed RNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA-directed RNA polymerase

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