SMTL ID : 3bv6.1

Crystal structure of uncharacterized metallo protein from Vibrio cholerae with beta-lactamase like fold

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-hexamer

Ligands

12 x FE: FE (III) ION(Non-covalent)

FE.1: 4 residues within 4Å: Chain A: H.141, H.143, D.208, D.251 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.141, A:H.143, A:D.208, A:D.251, H2O.2, H2O.6 FE.2: 5 residues within 4Å: Chain A: D.145, H.146, D.251, K.284, H.306 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.145, A:H.146, A:D.251, A:H.306, H2O.7 FE.3: 5 residues within 4Å: Chain B: D.145, H.146, D.251, K.284, H.306 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.145, B:H.146, B:D.251, B:H.306, H2O.30 FE.4: 4 residues within 4Å: Chain B: H.141, H.143, D.208, D.251 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.141, B:H.143, B:D.208, B:D.251, H2O.25, H2O.26 FE.5: 4 residues within 4Å: Chain C: H.141, H.143, D.208, D.251 6 PLIP interactions: 4 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:H.141, C:H.143, C:D.208, C:D.251, H2O.33, H2O.47 FE.6: 4 residues within 4Å: Chain C: D.145, H.146, D.251, H.306 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.145, C:H.146, C:D.251, C:H.306, H2O.47 FE.7: 4 residues within 4Å: Chain D: H.141, H.143, D.208, D.251 6 PLIP interactions: 4 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:H.141, D:H.143, D:D.208, D:D.251, H2O.52, H2O.52 FE.8: 5 residues within 4Å: Chain D: D.145, H.146, D.251, K.284, H.306 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.145, D:H.146, D:D.251, D:H.306, H2O.57 FE.9: 4 residues within 4Å: Chain E: H.141, H.143, D.208, D.251 6 PLIP interactions: 4 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:H.141, E:H.143, E:D.208, E:D.251, H2O.71, H2O.79 FE.10: 5 residues within 4Å: Chain E: D.145, H.146, D.251, K.284, H.306 6 PLIP interactions: 4 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:D.145, E:H.146, E:D.251, E:H.306, H2O.79, H2O.79 FE.11: 4 residues within 4Å: Chain F: H.141, H.143, D.208, D.251 6 PLIP interactions: 4 interactions with chain F, 2 Ligand-Water interactions Metal complexes: F:H.141, F:H.143, F:D.208, F:D.251, H2O.89, H2O.93 FE.12: 4 residues within 4Å: Chain F: D.145, H.146, D.251, H.306 5 PLIP interactions: 4 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:D.145, F:H.146, F:D.251, F:H.306, H2O.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Minasov, G. et al., Crystal structure of uncharacterized metallo protein from Vibrio cholerae with beta-lactamase like fold. To be Published

Release Date

2008-01-29

Peptides

Metal-dependent hydrolase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Metal-dependent hydrolase