SMTL ID : 3c2f.1

Crystal structure of the quinolinate phosphoribosyl transferase (BNA6) from Saccharomyces cerevisiae complexed with PRPP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-hexamer

Ligands

6 x PRP: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose(Non-covalent)

PRP.1: 13 residues within 4Å: Chain A: T.141, K.143, E.253, S.255, G.256, S.275, T.276, S.277 Chain B: K.47, R.106, F.288, S.289, K.291 14 PLIP interactions: 7 interactions with chain A, 7 interactions with chain B Hydrogen bonds: A:E.253, A:S.255, A:S.277 Salt bridges: A:K.143, A:K.143, A:K.143, A:K.143, B:K.47, B:R.106, B:R.106, B:K.291, B:K.291 Water bridges: B:R.106, B:K.291 PRP.2: 13 residues within 4Å: Chain A: K.47, R.106, F.288, S.289, K.291 Chain B: T.141, K.143, E.253, S.255, G.256, S.275, T.276, S.277 15 PLIP interactions: 7 interactions with chain A, 8 interactions with chain B Water bridges: A:E.105, A:E.105 Salt bridges: A:K.47, A:R.106, A:R.106, A:K.291, A:K.291, B:K.143, B:K.143, B:K.143, B:K.143 Hydrogen bonds: B:E.253, B:S.255, B:T.276, B:S.277 PRP.3: 13 residues within 4Å: Chain C: T.141, K.143, E.253, S.255, G.256, S.275, T.276, S.277 Chain D: K.47, R.106, F.288, S.289, K.291 14 PLIP interactions: 7 interactions with chain C, 7 interactions with chain D Hydrogen bonds: C:E.253, C:S.255, C:S.277 Salt bridges: C:K.143, C:K.143, C:K.143, C:K.143, D:K.47, D:R.106, D:R.106, D:K.291, D:K.291 Water bridges: D:R.106, D:K.291 PRP.4: 13 residues within 4Å: Chain C: K.47, R.106, F.288, S.289, K.291 Chain D: T.141, K.143, E.253, S.255, G.256, S.275, T.276, S.277 15 PLIP interactions: 8 interactions with chain D, 7 interactions with chain C Hydrogen bonds: D:E.253, D:S.255, D:T.276, D:S.277 Salt bridges: D:K.143, D:K.143, D:K.143, D:K.143, C:K.47, C:R.106, C:R.106, C:K.291, C:K.291 Water bridges: C:E.105, C:E.105 PRP.5: 13 residues within 4Å: Chain E: T.141, K.143, E.253, S.255, G.256, S.275, T.276, S.277 Chain F: K.47, R.106, F.288, S.289, K.291 14 PLIP interactions: 7 interactions with chain E, 7 interactions with chain F Hydrogen bonds: E:E.253, E:S.255, E:S.277 Salt bridges: E:K.143, E:K.143, E:K.143, E:K.143, F:K.47, F:R.106, F:R.106, F:K.291, F:K.291 Water bridges: F:R.106, F:K.291 PRP.6: 13 residues within 4Å: Chain E: K.47, R.106, F.288, S.289, K.291 Chain F: T.141, K.143, E.253, S.255, G.256, S.275, T.276, S.277 15 PLIP interactions: 8 interactions with chain F, 7 interactions with chain E Hydrogen bonds: F:E.253, F:S.255, F:T.276, F:S.277 Salt bridges: F:K.143, F:K.143, F:K.143, F:K.143, E:K.47, E:R.106, E:R.106, E:K.291, E:K.291 Water bridges: E:E.105, E:E.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

di Luccio, E. et al., Comprehensive X-ray Structural Studies of the Quinolinate Phosphoribosyl Transferase (BNA6) from Saccharomyces cerevisiae. Biochemistry (2008)

Release Date

2008-04-01

Peptides

Nicotinate-nucleotide pyrophosphorylase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Nicotinate-nucleotide pyrophosphorylase

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