SMTL ID : 3c3e.1 (1 other biounit)

Crystal structure of 2-phospho-(S)-lactate transferase from Methanosarcina mazei in complex with Fo and GDP. Northeast Structural Genomics Consortium target MaR46

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-dimer

Ligands

2 x FO1: 1-deoxy-1-(8-hydroxy-2,4-dioxo-3,4-dihydropyrimido[4,5-b]quinolin-10(2H)-yl)-D-ribitol(Non-covalent)

FO1.1: 8 residues within 4Å: Chain A: I.43, P.45, W.64, L.86, K.87, L.88, D.92, I.152 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:P.45, A:L.86, A:L.86, A:L.88 Hydrogen bonds: A:D.48, A:D.48, A:K.87 pi-Stacking: A:W.64, A:W.64, A:W.64, A:W.64 FO1.3: 11 residues within 4Å: Chain B: I.43, P.45, D.48, W.64, L.86, K.87, L.88, D.92, H.96, W.151, I.152 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:I.43, B:P.45, B:L.86, B:L.86, B:L.88 Hydrogen bonds: B:D.48, B:K.87 pi-Stacking: B:W.64, B:W.64, B:W.64, B:W.64

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.2: 19 residues within 4Å: Chain A: G.6, G.7, T.8, G.9, K.12, P.191, S.192, N.193, S.197, S.220, P.221, P.227, V.228, S.229, G.230, A.232, T.284, L.285, M.286 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:G.7, A:T.8, A:T.8, A:G.9, A:K.12, A:N.193, A:N.193, A:N.193, A:S.197, A:S.197, A:S.220, A:V.228, A:S.229, A:S.229, A:T.284 GDP.4: 18 residues within 4Å: Chain B: G.6, G.7, T.8, G.9, K.12, P.191, S.192, N.193, S.197, P.221, P.227, V.228, S.229, G.230, P.231, T.284, L.285, M.286 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:G.7, B:T.8, B:T.8, B:G.9, B:K.12, B:N.193, B:N.193, B:N.193, B:S.197, B:S.197, B:S.220, B:V.228, B:S.229, B:S.229, B:T.284 Water bridges: B:A.232

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Forouhar, F. et al., Molecular insights into the biosynthesis of the f420 coenzyme. J.Biol.Chem. (2008)

Release Date

2008-02-19

Peptides

2-phospho-L-lactate transferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

2-phospho-L-lactate transferase

Related Entries With Identical Sequence