SMTL ID : 3c66.2 (1 other biounit)

Yeast poly(A) polymerase in complex with Fip1 residues 80-105

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.1: 5 residues within 4Å: Chain A: I.9, T.10, R.242, W.266, Q.270 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.270 Water bridges: A:R.242, A:P.271 Salt bridges: A:R.242 MES.2: 4 residues within 4Å: Chain A: K.34, F.39, N.205, I.209 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.34, A:N.205

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: D.279, G.280, P.281 No protein-ligand interaction detected (PLIP) GOL.4: 5 residues within 4Å: Chain A: N.226, G.232, G.233, V.234, A.235 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.226, A:G.232, A:G.233, A:V.234, A:A.235 GOL.5: 5 residues within 4Å: Chain A: Q.162, P.163, Q.164, P.166, L.169 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.164, A:Q.164 Water bridges: A:Q.162 GOL.6: 6 residues within 4Å: Chain A: S.14, V.16, G.17, E.22, Y.247, A.250 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.17, A:E.22 GOL.7: 5 residues within 4Å: Chain A: E.182, N.189, R.285, P.308, M.310 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.285, A:R.285, A:P.308 Water bridges: A:N.189 GOL.8: 8 residues within 4Å: Chain A: P.269, P.271, W.287, P.289, D.295, R.296, H.298, P.301 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.295, A:H.298

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Meinke, G. et al., Structure of yeast poly(A) polymerase in complex with a peptide from Fip1, an intrinsically disordered protein. Biochemistry (2008)

Release Date

2008-05-20

Peptides

Poly(A) polymerase: A
Pre-mRNA polyadenylation factor FIP1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Poly(A) polymerase

Pre-mRNA polyadenylation factor FIP1

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