SMTL ID : 3c8o.2 (2 other biounits)

The Crystal Structure of RraA from PAO1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

21 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 2 residues within 4Å: Chain A: M.22, L.112 Ligand excluded by PLIP EDO.2: 5 residues within 4Å: Chain A: S.46, K.49, E.50, K.121 Ligands: PEG.24 Ligand excluded by PLIP EDO.3: 3 residues within 4Å: Chain A: H.2, Y.3 Ligands: EDO.17 Ligand excluded by PLIP EDO.4: 8 residues within 4Å: Chain A: N.45, A.72, L.74, G.75, L.78, R.97, K.118, K.121 Ligand excluded by PLIP EDO.5: 5 residues within 4Å: Chain A: Q.51, D.55, K.59, W.87 Ligands: EDO.14 Ligand excluded by PLIP EDO.6: 3 residues within 4Å: Chain A: N.128, P.140, G.141 Ligand excluded by PLIP EDO.7: 4 residues within 4Å: Chain A: P.140, G.141, E.142, P.155 Ligand excluded by PLIP EDO.8: 3 residues within 4Å: Chain A: E.80, K.81, K.84 Ligand excluded by PLIP EDO.9: 3 residues within 4Å: Chain A: G.123, I.124, G.125 Ligand excluded by PLIP EDO.10: 4 residues within 4Å: Chain A: N.25, F.26, G.27, A.103 Ligand excluded by PLIP EDO.11: 2 residues within 4Å: Chain A: V.101, Q.104 Ligand excluded by PLIP EDO.12: 3 residues within 4Å: Chain A: K.49, K.118, K.121 Ligand excluded by PLIP EDO.13: 3 residues within 4Å: Chain A: D.53, D.55, N.85 Ligand excluded by PLIP EDO.14: 2 residues within 4Å: Chain A: K.59 Ligands: EDO.5 Ligand excluded by PLIP EDO.15: 3 residues within 4Å: Chain A: G.67, Y.93, L.112 Ligand excluded by PLIP EDO.16: 1 residues within 4Å: Chain A: D.76 Ligand excluded by PLIP EDO.17: 3 residues within 4Å: Chain A: R.29, E.88 Ligands: EDO.3 Ligand excluded by PLIP EDO.18: 2 residues within 4Å: Chain A: Q.104, D.106 Ligand excluded by PLIP EDO.19: 3 residues within 4Å: Chain A: V.99, D.100 Ligands: PEG.29 Ligand excluded by PLIP EDO.20: 2 residues within 4Å: Chain A: P.13, V.16 Ligand excluded by PLIP EDO.21: 3 residues within 4Å: Chain A: D.126, L.127, V.129 Ligand excluded by PLIP

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.22: 8 residues within 4Å: Chain A: P.13, E.14, V.16, Q.17, V.18, G.135, V.136 Ligands: PEG.23 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.13, A:G.135 Water bridges: A:V.18

7 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.23: 8 residues within 4Å: Chain A: E.14, L.15, Q.17, E.142, V.153, S.154, P.155 Ligands: PGE.22 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.14, A:Q.17 Water bridges: A:T.137, A:E.142 PEG.24: 6 residues within 4Å: Chain A: S.46, E.50, K.121, R.122, G.123 Ligands: EDO.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.121 PEG.25: 4 residues within 4Å: Chain A: S.68, L.69, R.70 Ligands: PEG.26 No protein-ligand interaction detected (PLIP) PEG.26: 2 residues within 4Å: Chain A: L.69 Ligands: PEG.25 No protein-ligand interaction detected (PLIP) PEG.27: 4 residues within 4Å: Chain A: E.43, R.71, T.119, D.120 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.120, A:D.120 PEG.28: 8 residues within 4Å: Chain A: P.21, F.23, S.24, N.25, Q.110, D.147, N.148, N.149 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.25 Water bridges: A:P.21, A:F.23, A:N.25, A:Q.110 PEG.29: 5 residues within 4Å: Chain A: S.24, N.25, F.26, L.112 Ligands: EDO.19 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Luo, M. et al., The Crystal Structure of RraA from PAO1. To be published

Release Date

2009-02-17

Peptides

Regulator of ribonuclease activity A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Regulator of ribonuclease activity A

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