SMTL ID : 3c9q.1

Crystal structure of the uncharacterized human protein C8orf32 with bound peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x SER- THR- ALA: Synthetic peptide(Non-covalent)

SER-THR-ALA.1: 7 residues within 4Å: Chain A: C.26, C.28, I.77, W.78, D.79, Y.80, M.149 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.79, A:D.79, A:Y.80

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.18, L.102, P.103, F.104 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.102, A:F.104 Water bridges: A:R.18, A:R.18 Salt bridges: A:R.18 SO4.3: 4 residues within 4Å: Chain A: R.146, Y.163, P.164, C.165 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:C.165 Salt bridges: A:R.146 SO4.4: 5 residues within 4Å: Chain A: W.65, K.66, G.72, D.73, G.74 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:K.66, A:G.72, A:G.72, A:G.74 Water bridges: A:Q.67, A:D.114, A:K.117 Salt bridges: A:K.66 SO4.5: 2 residues within 4Å: Chain A: K.117, S.118 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.118 Water bridges: A:K.117, A:K.117 SO4.6: 3 residues within 4Å: Chain A: D.120, P.124, R.127 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.120 Water bridges: A:R.127, A:R.127 Salt bridges: A:R.127

1 x CO3: CARBONATE ION(Non-functional Binders)

CO3.7: 5 residues within 4Å: Chain A: Y.51, V.132, C.134, A.189, R.199 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.132 Water bridges: A:C.134

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.8: 6 residues within 4Å: Chain A: K.60, D.79, Y.80, H.148, N.176, I.179 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.60, A:D.79, A:N.176 EDO.9: 7 residues within 4Å: Chain A: P.16, A.20, C.21, V.22, K.34, L.35, Y.38 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.20, A:V.22, A:V.22 EDO.10: 5 residues within 4Å: Chain A: W.33, K.34, Y.163, P.164, I.166 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.34, A:K.34 EDO.11: 2 residues within 4Å: Chain A: K.40, N.41 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.40, A:N.41 Water bridges: A:N.41 EDO.12: 4 residues within 4Å: Chain A: W.65, G.74, P.75, K.117 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bitto, E. et al., Crystal structure of the uncharacterized human protein C8orf32 with bound peptide. To be Published

Release Date

2008-02-26

Peptides

Uncharacterized protein C8orf32: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Uncharacterized protein C8orf32