SMTL ID : 3cay.2 (1 other biounit)

Crystal structure of Lipopeptide Detergent (LPD-12)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

homo-octamer

Ligands

20 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)

LMT.1: 8 residues within 4Å: Chain A: Y.13 Chain G: X.25 Chain H: A.2, X.3, A.6, A.7 Ligands: LMT.2, LMT.16 Ligand excluded by PLIP LMT.2: 11 residues within 4Å: Chain A: A.2, X.3, E.5, A.6, A.7, K.9 Chain H: K.9, A.10, Y.13 Ligands: LMT.1, LMT.16 Ligand excluded by PLIP LMT.3: 5 residues within 4Å: Chain B: A.10, Y.13 Chain C: Y.13 Ligands: LMT.4, LMT.7 Ligand excluded by PLIP LMT.4: 8 residues within 4Å: Chain B: Y.13, X.25 Chain C: A.10, Y.13, A.14 Ligands: LMT.3, LMT.7, LMT.9 Ligand excluded by PLIP LMT.5: 4 residues within 4Å: Chain B: X.25 Chain C: X.3, A.6 Chain D: X.25 Ligand excluded by PLIP LMT.6: 10 residues within 4Å: Chain C: A.17, X.25 Chain D: A.7, A.10, A.11, A.14 Chain E: X.3 Ligands: LMT.9, LMT.11, LMT.12 Ligand excluded by PLIP LMT.7: 5 residues within 4Å: Chain B: X.3 Chain C: Y.13, A.17 Ligands: LMT.3, LMT.4 Ligand excluded by PLIP LMT.8: 5 residues within 4Å: Chain A: X.25 Chain D: X.3 Chain E: X.25 Chain H: X.3 Ligands: LMT.18 Ligand excluded by PLIP LMT.9: 11 residues within 4Å: Chain C: A.7, A.10, A.11 Chain D: A.17, K.20, A.21, X.25 Chain E: X.3 Ligands: LMT.4, LMT.6, LMT.10 Ligand excluded by PLIP LMT.10: 5 residues within 4Å: Chain E: X.3 Chain G: X.3 Chain H: X.25 Ligands: LMT.9, LMT.20 Ligand excluded by PLIP LMT.11: 8 residues within 4Å: Chain C: X.25 Chain D: A.2, X.3, A.6, A.7 Chain E: Y.13 Ligands: LMT.6, LMT.12 Ligand excluded by PLIP LMT.12: 11 residues within 4Å: Chain D: K.9, A.10, Y.13 Chain E: A.2, X.3, E.5, A.6, A.7, K.9 Ligands: LMT.6, LMT.11 Ligand excluded by PLIP LMT.13: 5 residues within 4Å: Chain F: A.10, Y.13 Chain G: Y.13 Ligands: LMT.14, LMT.17 Ligand excluded by PLIP LMT.14: 8 residues within 4Å: Chain F: Y.13, X.25 Chain G: A.10, Y.13, A.14 Ligands: LMT.13, LMT.17, LMT.19 Ligand excluded by PLIP LMT.15: 4 residues within 4Å: Chain F: X.25 Chain G: X.3, A.6 Chain H: X.25 Ligand excluded by PLIP LMT.16: 10 residues within 4Å: Chain A: X.3 Chain G: A.17, X.25 Chain H: A.7, A.10, A.11, A.14 Ligands: LMT.1, LMT.2, LMT.19 Ligand excluded by PLIP LMT.17: 5 residues within 4Å: Chain F: X.3 Chain G: Y.13, A.17 Ligands: LMT.13, LMT.14 Ligand excluded by PLIP LMT.18: 5 residues within 4Å: Chain A: X.25 Chain D: X.3 Chain E: X.25 Chain H: X.3 Ligands: LMT.8 Ligand excluded by PLIP LMT.19: 11 residues within 4Å: Chain A: X.3 Chain G: A.7, A.10, A.11 Chain H: A.17, K.20, A.21, X.25 Ligands: LMT.14, LMT.16, LMT.20 Ligand excluded by PLIP LMT.20: 5 residues within 4Å: Chain A: X.3 Chain C: X.3 Chain D: X.25 Ligands: LMT.10, LMT.19 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ho, D.N. et al., Crystal structure of a self-assembling lipopeptide detergent at 1.20 A. Proc.Natl.Acad.Sci.USA (2008)

Release Date

2008-09-09

Peptides

LPD-12: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I

B
J

C
K

D
L

E
I

F
J

G
K

H
L

LPD-12

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