SMTL ID : 3cc9.1 (1 other biounit)

Crystal structure of Plasmodium vivax putative polyprenyl pyrophosphate synthase in complex with geranylgeranyl diphosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 5 residues within 4Å: Chain A: N.82, N.83, R.84, E.116 Ligands: GRG.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.82, A:R.84, A:R.84, A:E.116 Water bridges: A:N.82, A:N.83

2 x GRG: GERANYLGERANYL DIPHOSPHATE(Non-covalent)

GRG.2: 23 residues within 4Å: Chain A: G.80, K.81, R.84, Q.119, A.121, F.122, L.123, A.125, D.126, M.129, R.135, R.136, V.156, T.188, T.191, I.192, Q.195, K.243, Y.247, F.283 Chain B: N.154, L.157 Ligands: NA.1 27 PLIP interactions: 25 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:A.121, A:F.122, A:F.122, A:F.122, A:L.123, A:A.125, A:V.156, A:T.188, A:T.191, A:Q.195, A:Q.195, A:Y.247, B:L.157, B:L.157 Hydrogen bonds: A:K.81, A:Q.119 Water bridges: A:K.81, A:K.81, A:R.84, A:R.84, A:R.136, A:R.136 Salt bridges: A:K.81, A:K.81, A:R.84, A:R.84, A:R.136 GRG.3: 22 residues within 4Å: Chain A: N.154, L.157 Chain B: G.80, K.81, R.84, Q.119, A.121, F.122, L.123, A.125, D.126, M.129, R.135, R.136, V.156, T.188, T.191, I.192, Q.195, K.243, Y.247, F.283 30 PLIP interactions: 28 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:A.121, B:F.122, B:F.122, B:F.122, B:L.123, B:A.125, B:D.126, B:V.156, B:T.188, B:T.191, B:Q.195, B:K.243, B:Y.247, A:L.157, A:L.157 Hydrogen bonds: B:K.81, B:R.84, B:Q.119 Water bridges: B:K.81, B:K.81, B:K.81, B:N.82, B:N.82, B:N.83, B:R.84, B:K.301 Salt bridges: B:K.81, B:K.81, B:R.84, B:R.136

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wernimont, A.K. et al., Crystal structure of Plasmodium vivax putative polyprenyl pyrophosphate synthase in complex with geranylgeranyl diphosphate. To be Published

Release Date

2008-03-25

Peptides

Putative farnesyl pyrophosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative farnesyl pyrophosphate synthase

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