- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 7 x CL: CHLORIDE ION(Non-functional Binders)
- 6 x ACT: ACETATE ION(Non-functional Binders)
ACT.8: 3 residues within 4Å:- Chain A: P.20, S.21, K.22
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:K.22
- Hydrogen bonds: A:S.21, A:S.21, A:K.22
ACT.9: 4 residues within 4Å:- Chain A: K.22, R.44, D.47
- Ligands: GOL.39
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:K.22
- Salt bridges: A:K.22, A:R.44
ACT.10: 6 residues within 4Å:- Chain A: N.425, G.426, E.427, H.428, E.429
- Ligands: GOL.35
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:E.429
- Hydrogen bonds: A:E.429
ACT.11: 3 residues within 4Å:- Chain A: S.132, K.133, K.134
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.133, A:K.134
- Salt bridges: A:K.134
ACT.12: 6 residues within 4Å:- Chain A: T.68, P.243, V.244, A.247
- Ligands: ACT.13, GOL.25
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:P.243
- Water bridges: A:T.68, A:T.68
ACT.13: 3 residues within 4Å:- Chain A: H.69, V.70
- Ligands: ACT.12
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:V.70
- Hydrogen bonds: A:V.70
- 1 x POP: PYROPHOSPHATE 2-(Non-covalent)
- 27 x GOL: GLYCEROL(Non-functional Binders)
GOL.15: 6 residues within 4Å:- Chain A: H.199, V.210, S.295, Y.327
- Ligands: GOL.16, GOL.32
Ligand excluded by PLIPGOL.16: 7 residues within 4Å:- Chain A: G.290, C.291, G.293, T.294, S.295
- Ligands: GOL.15, GOL.32
Ligand excluded by PLIPGOL.17: 6 residues within 4Å:- Chain A: K.38, L.162, D.397, E.400, S.401
- Ligands: POP.14
Ligand excluded by PLIPGOL.18: 4 residues within 4Å:- Chain A: Q.384, Y.385, R.455, L.459
Ligand excluded by PLIPGOL.19: 4 residues within 4Å:- Chain A: A.450, S.452, T.453, R.456
Ligand excluded by PLIPGOL.20: 6 residues within 4Å:- Chain A: R.416, L.448, P.449, A.450, T.453, K.457
Ligand excluded by PLIPGOL.21: 5 residues within 4Å:- Chain A: G.211, C.212, P.214, Y.327, R.377
Ligand excluded by PLIPGOL.22: 5 residues within 4Å:- Chain A: M.393, D.397, S.401, L.418, L.421
Ligand excluded by PLIPGOL.23: 7 residues within 4Å:- Chain A: T.370, N.371, Y.378, R.380
- Chain B: V.13, P.14, T.15
Ligand excluded by PLIPGOL.24: 5 residues within 4Å:- Chain A: L.150, N.151, K.261, N.264, Y.265
Ligand excluded by PLIPGOL.25: 9 residues within 4Å:- Chain A: P.243, F.246, A.247, K.250, I.266, D.267, C.270, N.271
- Ligands: ACT.12
Ligand excluded by PLIPGOL.26: 6 residues within 4Å:- Chain A: I.3, I.6, E.55, F.59, K.279, Y.281
Ligand excluded by PLIPGOL.27: 7 residues within 4Å:- Chain A: L.43, R.44, S.45, F.54, E.55, Y.276, R.277
Ligand excluded by PLIPGOL.28: 9 residues within 4Å:- Chain A: A.231, F.232, D.233, D.330, V.331, A.358, D.359, T.373, F.374
Ligand excluded by PLIPGOL.29: 6 residues within 4Å:- Chain A: I.58, F.59, S.60, K.61, Y.62, A.239
Ligand excluded by PLIPGOL.30: 6 residues within 4Å:- Chain A: K.61, R.174, Y.234, S.235, G.236
- Ligands: CL.7
Ligand excluded by PLIPGOL.31: 4 residues within 4Å:- Chain A: G.316, D.318, Y.335, W.337
Ligand excluded by PLIPGOL.32: 8 residues within 4Å:- Chain A: L.107, R.188, Y.195, H.199, S.292, G.293
- Ligands: GOL.15, GOL.16
Ligand excluded by PLIPGOL.33: 4 residues within 4Å:- Chain A: H.31, G.36, R.403, W.404
Ligand excluded by PLIPGOL.34: 8 residues within 4Å:- Chain A: A.381, D.382, E.383, H.390, R.455
- Chain B: K.10, P.11
- Ligands: GOL.35
Ligand excluded by PLIPGOL.35: 6 residues within 4Å:- Chain A: G.426, E.427, H.428, F.451
- Ligands: ACT.10, GOL.34
Ligand excluded by PLIPGOL.36: 3 residues within 4Å:- Chain A: P.338, I.339, D.340
Ligand excluded by PLIPGOL.37: 2 residues within 4Å:- Chain A: K.140, K.147
Ligand excluded by PLIPGOL.38: 3 residues within 4Å:- Chain A: T.114, S.115, Y.157
Ligand excluded by PLIPGOL.39: 5 residues within 4Å:- Chain A: D.47, P.48, R.49
- Ligands: ACT.9, GOL.40
Ligand excluded by PLIPGOL.40: 5 residues within 4Å:- Chain A: E.39, P.40, R.49, W.404
- Ligands: GOL.39
Ligand excluded by PLIPGOL.41: 6 residues within 4Å:- Chain A: P.222, V.223, A.381, P.386, V.389
- Chain B: P.7
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gruez, A. et al., The crystal structure of coxsackievirus B3 RNA-dependent RNA polymerase in complex with its protein primer VPg confirms the existence of a second VPg binding site on Picornaviridae polymerases. J.Virol. (2008)
- Release Date
- 2008-07-22
- Peptides
- RNA-directed RNA polymerase 3D-POL: A
Protein 3B: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
H
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 7 x CL: CHLORIDE ION(Non-functional Binders)
- 6 x ACT: ACETATE ION(Non-functional Binders)
- 1 x POP: PYROPHOSPHATE 2-(Non-covalent)
- 27 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gruez, A. et al., The crystal structure of coxsackievirus B3 RNA-dependent RNA polymerase in complex with its protein primer VPg confirms the existence of a second VPg binding site on Picornaviridae polymerases. J.Virol. (2008)
- Release Date
- 2008-07-22
- Peptides
- RNA-directed RNA polymerase 3D-POL: A
Protein 3B: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
H