- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- hetero-4-4-mer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 10 residues within 4Å:- Chain A: H.30, T.32, V.51, H.53, P.180, A.181
- Chain C: T.32, P.180, A.181
- Ligands: SO4.6
9 PLIP interactions:5 interactions with chain A, 4 interactions with chain C- Hydrogen bonds: A:A.181, C:T.32, C:T.32, C:A.181
- Water bridges: A:T.32, A:T.32, C:T.32
- Salt bridges: A:H.30, A:H.53
SO4.6: 10 residues within 4Å:- Chain A: T.32, P.180, A.181
- Chain C: H.30, T.32, V.51, H.53, P.180, A.181
- Ligands: SO4.2
9 PLIP interactions:4 interactions with chain A, 5 interactions with chain C- Hydrogen bonds: A:T.32, A:T.32, A:A.181, C:A.181
- Water bridges: A:T.32, C:T.32, C:T.32
- Salt bridges: C:H.30, C:H.53
SO4.10: 10 residues within 4Å:- Chain E: H.30, T.32, V.51, H.53, P.180, A.181
- Chain G: T.32, P.180, A.181
- Ligands: SO4.14
9 PLIP interactions:5 interactions with chain E, 4 interactions with chain G- Hydrogen bonds: E:T.32, E:A.181, G:T.32, G:T.32, G:A.181
- Water bridges: E:T.32, G:T.32
- Salt bridges: E:H.30, E:H.53
SO4.14: 10 residues within 4Å:- Chain E: T.32, P.180, A.181
- Chain G: H.30, T.32, V.51, H.53, P.180, A.181
- Ligands: SO4.10
9 PLIP interactions:4 interactions with chain E, 5 interactions with chain G- Hydrogen bonds: E:T.32, E:T.32, E:A.181, G:T.32, G:A.181
- Water bridges: E:T.32, G:T.32
- Salt bridges: G:H.30, G:H.53
- 4 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
GDP.3: 16 residues within 4Å:- Chain A: D.18, G.19, G.20, T.21, G.22, K.23, T.24, T.25, N.122, K.123, D.125, I.126, S.150, A.151, K.152
- Ligands: MG.1
20 PLIP interactions:20 interactions with chain A- Hydrogen bonds: A:D.18, A:G.20, A:T.21, A:G.22, A:K.23, A:T.24, A:T.24, A:T.25, A:T.25, A:E.70, A:N.122, A:K.123, A:K.123, A:A.151, A:K.152, A:K.152
- Water bridges: A:T.24, A:K.71
- Salt bridges: A:K.23, A:D.125
GDP.7: 16 residues within 4Å:- Chain C: D.18, G.19, G.20, T.21, G.22, K.23, T.24, T.25, N.122, K.123, D.125, I.126, S.150, A.151, K.152
- Ligands: MG.5
20 PLIP interactions:20 interactions with chain C- Hydrogen bonds: C:D.18, C:G.20, C:T.21, C:G.22, C:K.23, C:T.24, C:T.24, C:T.25, C:T.25, C:E.70, C:N.122, C:K.123, C:K.123, C:A.151, C:K.152, C:K.152
- Water bridges: C:T.24, C:K.71
- Salt bridges: C:K.23, C:D.125
GDP.11: 16 residues within 4Å:- Chain E: D.18, G.19, G.20, T.21, G.22, K.23, T.24, T.25, N.122, K.123, D.125, I.126, S.150, A.151, K.152
- Ligands: MG.9
22 PLIP interactions:22 interactions with chain E- Hydrogen bonds: E:D.18, E:G.20, E:T.21, E:G.22, E:K.23, E:T.24, E:T.25, E:T.25, E:E.70, E:E.70, E:N.122, E:K.123, E:K.123, E:A.151, E:K.152, E:K.152
- Water bridges: E:T.24, E:T.24, E:T.66, E:K.71
- Salt bridges: E:K.23, E:D.125
GDP.15: 16 residues within 4Å:- Chain G: D.18, G.19, G.20, T.21, G.22, K.23, T.24, T.25, N.122, K.123, D.125, I.126, S.150, A.151, K.152
- Ligands: MG.13
22 PLIP interactions:22 interactions with chain G- Hydrogen bonds: G:D.18, G:G.20, G:T.21, G:G.22, G:K.23, G:T.24, G:T.25, G:T.25, G:E.70, G:E.70, G:N.122, G:K.123, G:K.123, G:A.151, G:K.152, G:K.152
- Water bridges: G:T.24, G:T.24, G:T.66, G:K.71
- Salt bridges: G:K.23, G:D.125
- 4 x ZN: ZINC ION(Non-covalent)
ZN.4: 4 residues within 4Å:- Chain B: C.25, C.28, C.39, C.42
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:C.25, B:C.28, B:C.39, B:C.42
ZN.8: 4 residues within 4Å:- Chain D: C.25, C.28, C.39, C.42
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:C.25, D:C.28, D:C.39, D:C.42
ZN.12: 4 residues within 4Å:- Chain F: C.25, C.28, C.39, C.42
4 PLIP interactions:4 interactions with chain F- Metal complexes: F:C.25, F:C.28, F:C.39, F:C.42
ZN.16: 4 residues within 4Å:- Chain H: C.25, C.28, C.39, C.42
4 PLIP interactions:4 interactions with chain H- Metal complexes: H:C.25, H:C.28, H:C.39, H:C.42
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Schrader, N. et al., The Crystal Structure of the Ran-Nup153ZnF2 Complex: a General Ran Docking Site at the Nuclear Pore Complex. Structure (2008)
- Release Date
- 2008-07-01
- Peptides
- GTP-binding nuclear protein Ran: ACEG
Fragment of Nuclear pore complex protein Nup153: BDFH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AE
AG
AB
BD
BF
BH
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- hetero-4-4-mer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 4 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
- 4 x ZN: ZINC ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Schrader, N. et al., The Crystal Structure of the Ran-Nup153ZnF2 Complex: a General Ran Docking Site at the Nuclear Pore Complex. Structure (2008)
- Release Date
- 2008-07-01
- Peptides
- GTP-binding nuclear protein Ran: ACEG
Fragment of Nuclear pore complex protein Nup153: BDFH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AE
AG
AB
BD
BF
BH
B