SMTL ID : 3cj5.2 (1 other biounit)

Crystal structure of hepatitis c virus rna-dependent rna polymerase ns5b in complex with optimized small molecule fragments

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

monomer

Ligands

1 x SX6: N-(4-bromo-2-{[(3R,5S)-3,5-dimethylpiperidin-1-yl]carbonyl}phenyl)-4-morpholin-4-yl-4-oxobutanamide(Non-covalent)

SX6.1: 12 residues within 4Å: Chain A: L.425, R.428, M.429, L.480, H.481, S.482, Y.483, I.488, L.503, R.504, R.507, W.534 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.425, A:H.481, A:Y.483, A:I.488, A:L.503, A:W.534 Hydrogen bonds: A:S.482, A:R.507 Water bridges: A:W.534

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Antonysamy, S.S. et al., Fragment-based discovery of hepatitis C virus NS5b RNA polymerase inhibitors. Bioorg.Med.Chem.Lett. (2008)

Release Date

2008-04-15

Peptides

RNA-directed RNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

RNA-directed RNA polymerase

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