SMTL ID : 3cj8.1

Crystal structure of 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase from Enterococcus faecalis V583

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-trimer

Ligands

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 5 residues within 4Å: Chain A: N.119, G.137, G.138, G.156 Chain B: M.132 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: R.101 Chain B: R.93, M.113 Ligand excluded by PLIP CL.7: 5 residues within 4Å: Chain B: N.119, G.137, G.138, G.156 Chain C: M.132 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain B: R.101 Chain C: R.93, M.113 Ligand excluded by PLIP CL.13: 5 residues within 4Å: Chain A: M.132 Chain C: N.119, G.137, G.138, G.156 Ligand excluded by PLIP CL.14: 3 residues within 4Å: Chain A: R.93, M.113 Chain C: R.101 Ligand excluded by PLIP

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 6 residues within 4Å: Chain A: G.195, V.211 Chain B: G.195, V.211 Chain C: G.195, V.211 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: B:V.211 Hydrogen bonds: C:G.195

7 x FMT: FORMIC ACID(Non-functional Binders)

FMT.5: 5 residues within 4Å: Chain A: L.85, I.90, V.104, E.105, I.106 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.106 FMT.6: 5 residues within 4Å: Chain A: A.193, A.194, A.209, G.210 Chain C: V.211 1 PLIP interactions: 1 interactions with chain A Water bridges: A:G.210 FMT.9: 3 residues within 4Å: Chain A: L.181 Chain B: A.193, A.194 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:A.194 Water bridges: B:G.175, B:A.176 FMT.10: 3 residues within 4Å: Chain B: K.23, E.74, N.75 1 PLIP interactions: 1 interactions with chain B Water bridges: B:N.75 FMT.11: 2 residues within 4Å: Chain B: V.167, R.185 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.185, B:R.185 FMT.12: 2 residues within 4Å: Chain B: D.89, I.90 3 PLIP interactions: 3 interactions with chain B Water bridges: B:D.89, B:D.89, B:I.106 FMT.15: 5 residues within 4Å: Chain C: L.85, I.90, V.104, E.105, I.106 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:I.106 Water bridges: C:N.91, C:E.105

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.16: 9 residues within 4Å: Chain B: V.199, V.211, P.212 Chain C: A.193, A.194, G.195, A.196, A.209, G.210 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:A.194, C:G.210

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase from Enterococcus faecalis V583. To be Published

Release Date

2008-03-25

Peptides

2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase