SMTL ID : 3ckq.1

Crystal Structure of a Mycobacterial Protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-dimer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 3 residues within 4Å: Chain A: D.141, H.263 Ligands: UPG.3 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.141, A:H.263, H2O.1, H2O.1 MN.4: 3 residues within 4Å: Chain B: D.141, H.263 Ligands: UPG.6 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.141, B:H.263, H2O.1, H2O.1

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: V.113, P.114, R.116, R.320 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.116, A:R.320 SO4.5: 4 residues within 4Å: Chain B: V.113, P.114, R.116, R.320 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.116, B:R.320

2 x UPG: URIDINE-5'-DIPHOSPHATE-GLUCOSE(Non-covalent)

UPG.3: 18 residues within 4Å: Chain A: P.55, A.56, L.57, E.59, S.86, G.118, K.119, D.139, S.140, D.141, G.188, L.214, G.216, Y.234, E.237, H.263, M.274 Ligands: MN.1 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:L.57 Hydrogen bonds: A:L.57, A:L.57, A:S.86, A:S.86, A:G.118, A:K.119, A:D.139, A:S.140, A:S.140, A:D.141, A:Y.234 Water bridges: A:D.139, A:E.237, A:H.263, A:R.264 Salt bridges: A:H.263 UPG.6: 18 residues within 4Å: Chain B: P.55, A.56, L.57, E.59, S.86, G.118, K.119, D.139, S.140, D.141, G.188, L.214, G.216, Y.234, E.237, H.263, M.274 Ligands: MN.4 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:L.57 Hydrogen bonds: B:L.57, B:L.57, B:S.86, B:S.86, B:G.118, B:K.119, B:D.139, B:S.140, B:S.140, B:D.141, B:Y.234, B:Y.234, B:E.237 Water bridges: B:D.139, B:D.139, B:E.237, B:H.263, B:R.264 Salt bridges: B:H.263

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fulton, Z. et al., Crystal structure of a UDP-glucose-specific glycosyltransferase from a Mycobacterium species. J.Biol.Chem. (2008)

Release Date

2008-07-29

Peptides

Putative uncharacterized protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Putative uncharacterized protein

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