SMTL ID : 3clm.1

Crystal structure of transaldolase (YP_208650.1) from Neisseria gonorrhoeae FA 1090 at 1.14 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.14 Å

Oligo State

monomer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: N.44, K.139, T.163, F.202, F.340 Ligand excluded by PLIP

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: S.204, R.205, S.260, K.264 Ligands: EDO.3 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.204, A:S.260 Water bridges: A:K.264, A:K.264, A:K.264 Salt bridges: A:R.205, A:K.264

11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: D.18, N.44, F.202, R.205, A.259, S.260 Ligands: SO4.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.18, A:S.260, A:S.260 Water bridges: A:T.42, A:N.44, A:T.261 EDO.4: 5 residues within 4Å: Chain A: E.96, G.99, G.100, K.134, H.194 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.134 Water bridges: A:H.194 EDO.5: 6 residues within 4Å: Chain A: K.134, G.157, I.158, S.159, H.194, I.195 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.134, A:G.157, A:S.159 Water bridges: A:A.136 EDO.6: 5 residues within 4Å: Chain A: K.219, G.220, K.221, Y.268, L.272 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.219, A:K.221 EDO.7: 5 residues within 4Å: Chain A: G.322, I.323, D.324, T.327, L.328 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.324, A:D.324 EDO.8: 5 residues within 4Å: Chain A: P.111, E.112, A.114, L.337, E.341 No protein-ligand interaction detected (PLIP) EDO.9: 5 residues within 4Å: Chain A: Q.74, E.77, T.78, V.81, A.130 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.74, A:E.77 Water bridges: A:R.126 EDO.10: 4 residues within 4Å: Chain A: K.9, E.94, S.97, T.98 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.9, A:S.97, A:S.97 EDO.11: 3 residues within 4Å: Chain A: H.128, D.156, I.158 No protein-ligand interaction detected (PLIP) EDO.12: 6 residues within 4Å: Chain A: A.117, Q.118, V.121, D.148, A.149, T.152 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.152 Water bridges: A:D.148 EDO.13: 4 residues within 4Å: Chain A: G.12, Q.14, V.280, H.281 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.281 Water bridges: A:G.12, A:Q.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of transaldolase (YP_208650.1) from Neisseria gonorrhoeae FA 1090 at 1.14 A resolution. To be published

Release Date

2008-04-01

Peptides

Transaldolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Transaldolase

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