SMTL ID : 3cmv.7 (7 other biounits)

Mechanism of homologous recombination from the RecA-ssDNA/dsDNA structures

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 4.30 Å

Oligo State

monomer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: T.48, A.73, D.119 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:T.48 MG.2: 4 residues within 4Å: Chain A: T.397, A.422, L.423, D.468 No protein-ligand interaction detected (PLIP) MG.3: 4 residues within 4Å: Chain A: T.746, A.771, L.772, D.817 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.817 MG.4: 3 residues within 4Å: Chain A: T.1096, D.1167 Ligands: ANP.8 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:T.1096

4 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.5: 12 residues within 4Å: Chain A: E.43, S.44, S.45, G.46, K.47, T.48, T.49, D.75, Y.78, S.215, Y.239, G.240 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:E.43, A:E.43, A:S.44, A:S.45, A:G.46, A:K.47, A:K.47, A:K.47, A:T.48, A:T.49, A:T.49, A:D.75, A:D.75, A:Y.78, A:S.215, A:S.215, A:G.240 pi-Stacking: A:Y.78, A:Y.78 ANP.6: 12 residues within 4Å: Chain A: E.392, S.393, S.394, G.395, K.396, T.397, T.398, E.420, D.424, Y.427, Y.588, G.589 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:S.393, A:S.394, A:G.395, A:K.396, A:K.396, A:T.397, A:T.398, A:T.398, A:E.420, A:D.424, A:D.424, A:G.589 pi-Stacking: A:Y.427 ANP.7: 12 residues within 4Å: Chain A: P.740, E.741, S.742, S.743, G.744, K.745, T.746, T.747, E.769, D.773, S.913, Y.937 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:S.742, A:S.743, A:G.744, A:K.745, A:K.745, A:T.746, A:T.747, A:T.747, A:E.769, A:D.773, A:D.773, A:S.913 pi-Stacking: A:Y.776 ANP.8: 14 residues within 4Å: Chain A: P.1090, E.1091, S.1092, S.1093, G.1094, K.1095, T.1096, T.1097, E.1119, D.1123, Y.1126, Q.1217, Y.1287 Ligands: MG.4 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:S.1092, A:S.1093, A:G.1094, A:K.1095, A:K.1095, A:K.1095, A:T.1096, A:T.1097, A:D.1123, A:D.1123, A:Q.1217 pi-Stacking: A:Y.1126

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Z. et al., Mechanism of homologous recombination from the RecA-ssDNA/dsDNA structures. Nature (2008)

Release Date

2008-05-20

Peptides

Protein recA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

Protein recA

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