- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- monomer
- Ligands
- 5 x MG: MAGNESIUM ION(Non-covalent)
- 5 x ALF: TETRAFLUOROALUMINATE ION(Non-covalent)
ALF.2: 9 residues within 4Å:- Chain B: E.43, S.44, K.47, E.71, F.541, K.572, K.574
- Ligands: MG.1, ADP.11
No protein-ligand interaction detected (PLIP)ALF.4: 9 residues within 4Å:- Chain B: E.392, S.393, K.396, E.420, F.890, K.921, K.923
- Ligands: MG.3, ADP.12
No protein-ligand interaction detected (PLIP)ALF.6: 9 residues within 4Å:- Chain B: E.741, S.742, K.745, E.769, F.1240, K.1271, K.1273
- Ligands: MG.5, ADP.13
No protein-ligand interaction detected (PLIP)ALF.8: 9 residues within 4Å:- Chain B: E.1091, S.1092, K.1095, E.1119, F.1589, K.1620, K.1622
- Ligands: MG.7, ADP.14
No protein-ligand interaction detected (PLIP)ALF.10: 6 residues within 4Å:- Chain B: E.1440, S.1441, K.1444, E.1468
- Ligands: MG.9, ADP.15
No protein-ligand interaction detected (PLIP)- 5 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.11: 18 residues within 4Å:- Chain B: S.44, S.45, G.46, K.47, T.48, T.49, D.75, Y.78, S.215, Y.239, N.573, K.574, I.575, A.576, A.577, P.578
- Ligands: MG.1, ALF.2
14 PLIP interactions:14 interactions with chain B- Hydrogen bonds: B:S.44, B:S.45, B:G.46, B:K.47, B:T.48, B:T.49, B:T.49, B:D.75, B:S.215, B:S.215, B:I.575
- Salt bridges: B:K.47
- pi-Stacking: B:Y.78, B:Y.78
ADP.12: 18 residues within 4Å:- Chain B: S.393, S.394, G.395, K.396, T.397, T.398, D.424, Y.427, S.564, Y.588, N.922, K.923, I.924, A.925, A.926, P.927
- Ligands: MG.3, ALF.4
14 PLIP interactions:14 interactions with chain B- Hydrogen bonds: B:S.393, B:S.394, B:G.395, B:K.396, B:T.397, B:T.398, B:T.398, B:D.424, B:S.564, B:S.564, B:I.924
- Salt bridges: B:K.396
- pi-Stacking: B:Y.427, B:Y.427
ADP.13: 18 residues within 4Å:- Chain B: S.742, S.743, G.744, K.745, T.746, T.747, D.773, Y.776, S.913, Y.937, N.1272, K.1273, I.1274, A.1275, A.1276, P.1277
- Ligands: MG.5, ALF.6
14 PLIP interactions:14 interactions with chain B- Hydrogen bonds: B:S.742, B:S.743, B:G.744, B:K.745, B:T.746, B:T.747, B:T.747, B:D.773, B:S.913, B:S.913, B:I.1274
- Salt bridges: B:K.745
- pi-Stacking: B:Y.776, B:Y.776
ADP.14: 18 residues within 4Å:- Chain B: S.1092, S.1093, G.1094, K.1095, T.1096, T.1097, D.1123, Y.1126, S.1263, Y.1287, N.1621, K.1622, I.1623, A.1624, A.1625, P.1626
- Ligands: MG.7, ALF.8
15 PLIP interactions:15 interactions with chain B- Hydrogen bonds: B:S.1092, B:S.1093, B:G.1094, B:K.1095, B:T.1096, B:T.1097, B:T.1097, B:Y.1126, B:S.1263, B:S.1263, B:Y.1287, B:I.1623
- Salt bridges: B:K.1095
- pi-Stacking: B:Y.1126, B:Y.1126
ADP.15: 13 residues within 4Å:- Chain B: E.1440, S.1441, S.1442, G.1443, K.1444, T.1445, T.1446, D.1472, Y.1475, S.1612, Y.1636
- Ligands: MG.9, ALF.10
13 PLIP interactions:13 interactions with chain B- Hydrogen bonds: B:S.1441, B:S.1442, B:G.1443, B:K.1444, B:T.1445, B:T.1446, B:D.1472, B:S.1612, B:S.1612, B:Y.1636
- Salt bridges: B:K.1444
- pi-Stacking: B:Y.1475, B:Y.1475
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chen, Z. et al., Mechanism of homologous recombination from the RecA-ssDNA/dsDNA structures. Nature (2008)
- Release Date
- 2008-05-20
- Peptides
- Protein recA: B
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:B
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- monomer
- Ligands
- 5 x MG: MAGNESIUM ION(Non-covalent)
- 5 x ALF: TETRAFLUOROALUMINATE ION(Non-covalent)
- 5 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chen, Z. et al., Mechanism of homologous recombination from the RecA-ssDNA/dsDNA structures. Nature (2008)
- Release Date
- 2008-05-20
- Peptides
- Protein recA: B
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:B
A