- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.40 Å
- Oligo State
- monomer
- Ligands
- 5 x MG: MAGNESIUM ION(Non-covalent)
- 5 x ALF: TETRAFLUOROALUMINATE ION(Non-covalent)
ALF.2: 10 residues within 4Å:- Chain C: E.43, S.44, K.47, T.48, E.71, F.541, K.572, K.574
- Ligands: MG.1, ADP.11
No protein-ligand interaction detected (PLIP)ALF.4: 10 residues within 4Å:- Chain C: E.392, S.393, K.396, T.397, E.420, F.890, K.921, K.923
- Ligands: MG.3, ADP.12
No protein-ligand interaction detected (PLIP)ALF.6: 10 residues within 4Å:- Chain C: E.741, S.742, K.745, T.746, E.769, F.1240, K.1271, K.1273
- Ligands: MG.5, ADP.13
No protein-ligand interaction detected (PLIP)ALF.8: 10 residues within 4Å:- Chain C: E.1091, S.1092, K.1095, T.1096, E.1119, F.1589, K.1620, K.1622
- Ligands: MG.7, ADP.14
No protein-ligand interaction detected (PLIP)ALF.10: 7 residues within 4Å:- Chain C: E.1440, S.1441, K.1444, T.1445, E.1468
- Ligands: MG.9, ADP.15
No protein-ligand interaction detected (PLIP)- 5 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.11: 18 residues within 4Å:- Chain C: S.44, S.45, G.46, K.47, T.48, T.49, D.75, Y.78, S.215, Y.239, N.573, K.574, I.575, A.576, A.577, P.578
- Ligands: MG.1, ALF.2
17 PLIP interactions:17 interactions with chain C- Hydrogen bonds: C:S.44, C:S.44, C:S.45, C:G.46, C:K.47, C:T.48, C:T.48, C:T.49, C:T.49, C:D.75, C:S.215, C:S.215, C:N.573, C:K.574
- Salt bridges: C:K.47
- pi-Stacking: C:Y.78, C:Y.78
ADP.12: 19 residues within 4Å:- Chain C: E.392, S.393, S.394, G.395, K.396, T.397, T.398, D.424, Y.427, S.564, Y.588, N.922, K.923, I.924, A.925, A.926, P.927
- Ligands: MG.3, ALF.4
16 PLIP interactions:16 interactions with chain C- Hydrogen bonds: C:S.393, C:S.393, C:S.394, C:G.395, C:K.396, C:T.397, C:T.397, C:T.398, C:T.398, C:D.424, C:S.564, C:S.564, C:K.923
- Salt bridges: C:K.396
- pi-Stacking: C:Y.427, C:Y.427
ADP.13: 18 residues within 4Å:- Chain C: S.742, S.743, G.744, K.745, T.746, T.747, D.773, Y.776, S.913, Y.937, N.1272, K.1273, I.1274, A.1275, A.1276, P.1277
- Ligands: MG.5, ALF.6
18 PLIP interactions:18 interactions with chain C- Hydrogen bonds: C:P.740, C:S.742, C:S.742, C:S.742, C:S.743, C:G.744, C:K.745, C:T.746, C:T.746, C:T.747, C:T.747, C:D.773, C:S.913, C:S.913, C:K.1273
- Salt bridges: C:K.745
- pi-Stacking: C:Y.776, C:Y.776
ADP.14: 19 residues within 4Å:- Chain C: E.1091, S.1092, S.1093, G.1094, K.1095, T.1096, T.1097, D.1123, Y.1126, S.1263, Y.1287, N.1621, K.1622, I.1623, A.1624, A.1625, P.1626
- Ligands: MG.7, ALF.8
17 PLIP interactions:17 interactions with chain C- Hydrogen bonds: C:S.1092, C:S.1093, C:G.1094, C:K.1095, C:T.1096, C:T.1096, C:T.1097, C:T.1097, C:Y.1126, C:S.1263, C:S.1263, C:Y.1287, C:K.1622
- Salt bridges: C:K.1095, C:K.1622
- pi-Stacking: C:Y.1126, C:Y.1126
ADP.15: 14 residues within 4Å:- Chain C: P.1439, E.1440, S.1441, S.1442, G.1443, K.1444, T.1445, T.1446, D.1472, Y.1475, S.1612, Y.1636
- Ligands: MG.9, ALF.10
16 PLIP interactions:16 interactions with chain C- Hydrogen bonds: C:P.1439, C:S.1441, C:S.1442, C:G.1443, C:K.1444, C:T.1445, C:T.1445, C:T.1446, C:T.1446, C:D.1472, C:S.1612, C:S.1612, C:Y.1636
- Salt bridges: C:K.1444
- pi-Stacking: C:Y.1475, C:Y.1475
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chen, Z. et al., Mechanism of homologous recombination from the RecA-ssDNA/dsDNA structures. Nature (2008)
- Release Date
- 2008-05-20
- Peptides
- Protein recA: C
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:C
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.40 Å
- Oligo State
- monomer
- Ligands
- 5 x MG: MAGNESIUM ION(Non-covalent)
- 5 x ALF: TETRAFLUOROALUMINATE ION(Non-covalent)
- 5 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chen, Z. et al., Mechanism of homologous recombination from the RecA-ssDNA/dsDNA structures. Nature (2008)
- Release Date
- 2008-05-20
- Peptides
- Protein recA: C
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:C
D