SMTL ID : 3cnp.1

Crystal structure of fms1 in complex with S-N1-AcMeSpermidine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 40 residues within 4Å: Chain A: I.14, G.15, G.17, I.18, A.19, L.38, E.39, A.40, R.41, G.45, G.46, R.47, L.48, I.61, G.62, A.63, S.64, W.65, H.67, Y.201, C.221, E.222, V.223, T.252, V.253, P.254, V.257, G.270, L.294, W.440, Y.445, A.449, Y.450, G.478, E.479, G.487, C.488, A.489, A.492 Ligands: SP7.2 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:L.294, A:Y.450 Hydrogen bonds: A:A.19, A:A.40, A:R.41, A:G.45, A:R.47, A:R.47, A:A.63, A:S.64, A:W.65, A:W.65, A:V.223, A:V.223, A:E.479, A:G.487, A:A.489 Water bridges: A:G.17, A:I.18, A:G.20, A:R.47, A:R.47, A:L.48, A:H.67 Salt bridges: A:R.47, A:R.47 pi-Stacking: A:Y.445 FAD.3: 40 residues within 4Å: Chain B: I.14, G.15, A.16, G.17, I.18, A.19, L.38, E.39, A.40, R.41, G.45, G.46, R.47, L.48, I.61, G.62, A.63, S.64, W.65, H.67, C.221, E.222, V.223, T.252, V.253, P.254, V.257, G.270, L.294, W.440, Y.445, A.449, Y.450, G.478, E.479, G.487, C.488, A.489, A.492 Ligands: SP7.4 33 PLIP interactions: 33 interactions with chain B Hydrophobic interactions: B:L.294, B:W.440, B:A.449, B:Y.450 Hydrogen bonds: B:A.16, B:G.17, B:A.19, B:A.40, B:R.41, B:R.41, B:G.45, B:R.47, B:R.47, B:A.63, B:S.64, B:W.65, B:W.65, B:V.223, B:V.223, B:E.479, B:G.487, B:A.489 Water bridges: B:I.18, B:I.18, B:G.20, B:G.46, B:R.47, B:H.67, B:Y.201, B:H.480 Salt bridges: B:R.47, B:R.47 pi-Stacking: B:Y.445

2 x SP7: N-{(1S)-3-[(4-aminobutyl)amino]-1-methylpropyl}acetamide(Non-covalent)

SP7.2: 13 residues within 4Å: Chain A: H.67, L.173, W.174, H.175, D.186, L.294, Y.450, S.451, A.452, A.486, G.487, C.488 Ligands: FAD.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.450, A:Y.450, A:Y.450, A:A.452, A:A.486 Hydrogen bonds: A:W.174, A:A.486 Water bridges: A:L.173, A:H.175 SP7.4: 12 residues within 4Å: Chain B: W.65, H.67, L.173, W.174, H.175, L.375, Y.450, A.486, G.487, C.488 Ligands: FAD.3, GOL.5 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:W.65, B:L.375, B:Y.450 Hydrogen bonds: B:H.67, B:W.174

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 6 residues within 4Å: Chain B: D.186, S.451, C.453, A.486, G.487 Ligands: SP7.4 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.186, B:S.451, B:A.486 Water bridges: B:E.479, B:H.480

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, Q. et al., Crystal structure of fms1 in complex with S-N1-AcMeSpermidine. TO BE PUBLISHED

Release Date

2008-04-22

Peptides

fms1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

fms1

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