SMTL ID : 3cnt.1

Crystal structure of fms1 in complex with R-Bz-MeSpermidine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 40 residues within 4Å: Chain A: G.15, A.16, G.17, I.18, A.19, L.38, E.39, A.40, R.41, G.45, G.46, R.47, L.48, I.61, G.62, A.63, S.64, W.65, H.67, C.221, E.222, V.223, T.252, V.253, P.254, V.257, G.270, I.272, L.294, W.440, Y.445, A.449, Y.450, G.478, E.479, G.487, C.488, A.489, A.492 Ligands: SP9.2 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:L.294, A:W.440, A:Y.450 Hydrogen bonds: A:I.18, A:A.19, A:A.40, A:R.41, A:G.45, A:R.47, A:R.47, A:A.63, A:S.64, A:W.65, A:W.65, A:V.223, A:V.223, A:E.479, A:G.487, A:A.489 Water bridges: A:R.47 Salt bridges: A:R.47, A:R.47 FAD.3: 39 residues within 4Å: Chain B: G.15, A.16, G.17, I.18, A.19, L.38, E.39, A.40, R.41, G.45, G.46, R.47, L.48, I.61, G.62, A.63, S.64, W.65, H.67, C.221, E.222, V.223, T.252, V.253, P.254, V.257, G.270, I.272, L.294, W.440, Y.445, A.449, Y.450, G.478, E.479, G.487, C.488, A.489, A.492 24 PLIP interactions: 24 interactions with chain B Hydrophobic interactions: B:W.440, B:A.449, B:Y.450 Hydrogen bonds: B:A.16, B:G.17, B:A.19, B:E.39, B:A.40, B:R.41, B:G.45, B:R.47, B:R.47, B:A.63, B:S.64, B:W.65, B:W.65, B:V.223, B:V.223, B:E.479, B:G.487, B:A.489 Water bridges: B:G.20 Salt bridges: B:R.47, B:R.47

1 x SP9: N-{(1R)-3-[(4-aminobutyl)amino]-1-methylpropyl}benzamide(Non-covalent)

SP9.2: 11 residues within 4Å: Chain A: W.65, H.67, L.173, W.174, L.294, F.359, L.375, Y.450, A.486, C.488 Ligands: FAD.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.65, A:F.359, A:L.375, A:Y.450 pi-Stacking: A:W.174

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, Q. et al., Crystal structure of fms1 in complex with R-Bz-MeSpermidine. TO BE PUBLISHED

Release Date

2008-04-22

Peptides

fms1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

fms1

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