SMTL ID : 3co8.1

Crystal structure of alanine racemase from Oenococcus oeni

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)

PLP.1: 11 residues within 4Å: Chain A: A.38, K.40, Y.44, L.86, H.167, N.203, S.204, R.222, V.223, G.224, T.225 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:K.40, A:L.86 Hydrogen bonds: A:K.40, A:Y.44, A:Y.44, A:S.204, A:R.222, A:G.224, A:T.225 Water bridges: A:A.169, A:N.203, A:N.203, A:N.203 pi-Stacking: A:H.167 PLP.2: 12 residues within 4Å: Chain B: K.40, Y.44, L.86, R.136, F.165, H.167, N.203, S.204, R.222, V.223, G.224, T.225 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:K.40, B:L.86, B:F.165 Hydrogen bonds: B:Y.44, B:R.136, B:S.204, B:R.222, B:G.224, B:T.225, B:T.225 Water bridges: B:R.136, B:N.203, B:N.203, B:N.203 pi-Stacking: B:H.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Palani, K. et al., Structure of alanine racemase from Oenococcus oeni with bound pyridoxal 5'-phosphate. Acta Crystallogr.,Sect.F (2013)

Release Date

2008-04-08

Peptides

Alanine racemase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Alanine racemase