SMTL ID : 3cpm.1 (1 other biounit)

plant peptide deformylase PDF1B crystal structure

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: R.33, N.90, K.92, R.128, R.134 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.90 Salt bridges: A:R.33, A:K.92, A:R.128, A:R.134

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: Q.64, C.107, H.149, H.153 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.107, A:H.149, A:H.153, H2O.2 ZN.3: 2 residues within 4Å: Chain A: D.46, D.50 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.46, A:D.50 ZN.4: 2 residues within 4Å: Chain A: D.10, D.35 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.10, A:D.35, A:D.35 ZN.5: 2 residues within 4Å: Chain A: E.173, E.176 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.173, A:E.173, A:E.176, A:E.176, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dirk, L.M. et al., Insights into the substrate specificity of plant peptide deformylase, an essential enzyme with potential for the development of novel biotechnology applications in agriculture. Biochem.J. (2008)

Release Date

2008-07-22

Peptides

Peptide deformylase, chloroplast: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptide deformylase, chloroplast

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