- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.86 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x NA: SODIUM ION(Non-functional Binders)
- 10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.3: 3 residues within 4Å:- Chain A: A.88, H.89
- Ligands: EDO.7
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:A.88, A:S.92
- Water bridges: A:H.89
EDO.4: 4 residues within 4Å:- Chain A: N.2, A.3, S.4
- Chain D: D.50
7 PLIP interactions:5 interactions with chain A, 2 interactions with chain D- Hydrogen bonds: A:N.2, A:A.3, A:S.4, A:S.4, D:D.50
- Water bridges: A:K.5, D:D.50
EDO.5: 2 residues within 4Å:- Chain A: H.76, N.77
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.77
EDO.7: 4 residues within 4Å:- Chain B: A.88, H.89, S.92
- Ligands: EDO.3
5 PLIP interactions:5 interactions with chain B- Water bridges: B:H.89, B:S.92, B:S.92, B:S.92, B:S.92
EDO.8: 7 residues within 4Å:- Chain B: S.51, A.52, T.72, G.73, H.76
- Chain C: K.5
- Ligands: NA.6
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:K.5
EDO.12: 3 residues within 4Å:- Chain C: A.88, H.89
- Ligands: EDO.16
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:A.88, C:H.89, C:S.92
- Water bridges: C:H.89
EDO.13: 4 residues within 4Å:- Chain B: D.50
- Chain C: N.2, A.3, S.4
7 PLIP interactions:5 interactions with chain C, 2 interactions with chain B- Hydrogen bonds: C:N.2, C:A.3, C:S.4, C:S.4, B:D.50
- Water bridges: C:K.5, B:D.50
EDO.14: 2 residues within 4Å:- Chain C: H.76, N.77
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:N.77
EDO.16: 4 residues within 4Å:- Chain D: A.88, H.89, S.92
- Ligands: EDO.12
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:H.89
- Water bridges: D:H.89, D:S.92, D:S.92, D:S.92, D:S.92
EDO.17: 7 residues within 4Å:- Chain A: K.5
- Chain D: S.51, A.52, T.72, G.73, H.76
- Ligands: NA.15
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain D- Hydrogen bonds: A:K.5, D:T.72
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.9: 6 residues within 4Å:- Chain B: W.27, L.74, L.75, M.78, R.80, A.83
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:R.80, B:R.80
- Water bridges: B:T.24, B:L.75
GOL.18: 6 residues within 4Å:- Chain D: W.27, L.74, L.75, M.78, R.80, A.83
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:R.80, D:R.80
- Water bridges: D:T.24, D:L.75
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wu, R. et al., The crystal structure of heat shock protein HtpX domain from Vibrio parahaemolyticus RIMD 2210633. To be Published
- Release Date
- 2008-05-27
- Peptides
- Probable protease htpX homolog: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.86 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x NA: SODIUM ION(Non-functional Binders)
- 10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wu, R. et al., The crystal structure of heat shock protein HtpX domain from Vibrio parahaemolyticus RIMD 2210633. To be Published
- Release Date
- 2008-05-27
- Peptides
- Probable protease htpX homolog: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B