SMTL ID : 3cvo.1 (1 other biounit)

Crystal structure of a methyltransferase-like protein (spo2022) from silicibacter pomeroyi dss-3 at 1.80 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.61, A.62, R.65 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.61 Salt bridges: A:R.65 SO4.14: 3 residues within 4Å: Chain B: R.121, H.122 Ligands: EDO.23 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.122 Water bridges: B:R.146 Salt bridges: B:R.121

25 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: P.91, V.99, S.100, A.102 Ligand excluded by PLIP EDO.3: 3 residues within 4Å: Chain A: A.102, R.105 Chain B: D.101 Ligand excluded by PLIP EDO.4: 8 residues within 4Å: Chain A: V.33, T.55, V.114, T.117, F.120, R.121, P.123 Ligands: EDO.11 Ligand excluded by PLIP EDO.5: 3 residues within 4Å: Chain A: R.61, R.65 Ligands: EDO.8 Ligand excluded by PLIP EDO.6: 2 residues within 4Å: Chain A: R.121, H.122 Ligand excluded by PLIP EDO.7: 3 residues within 4Å: Chain A: R.105 Chain B: S.201 Ligands: EDO.17 Ligand excluded by PLIP EDO.8: 5 residues within 4Å: Chain A: R.61, R.65, K.68, W.86 Ligands: EDO.5 Ligand excluded by PLIP EDO.9: 3 residues within 4Å: Chain A: W.86, T.87, D.88 Ligand excluded by PLIP EDO.10: 2 residues within 4Å: Chain A: M.193 Chain B: R.116 Ligand excluded by PLIP EDO.11: 6 residues within 4Å: Chain A: H.53, T.55, N.83, E.118, G.119 Ligands: EDO.4 Ligand excluded by PLIP EDO.12: 3 residues within 4Å: Chain A: D.60, A.62, W.63 Ligand excluded by PLIP EDO.13: 7 residues within 4Å: Chain A: R.11, P.12, L.14, R.25, G.41, V.44, V.45 Ligand excluded by PLIP EDO.15: 7 residues within 4Å: Chain B: R.11, P.12, E.13, L.14, G.41, V.44, V.45 Ligand excluded by PLIP EDO.16: 3 residues within 4Å: Chain B: H.97, P.98, P.202 Ligand excluded by PLIP EDO.17: 5 residues within 4Å: Chain A: R.105 Chain B: R.197, T.200, S.201 Ligands: EDO.7 Ligand excluded by PLIP EDO.18: 8 residues within 4Å: Chain B: H.53, T.55, N.83, T.117, E.118, G.119, F.120 Ligands: EDO.25 Ligand excluded by PLIP EDO.19: 5 residues within 4Å: Chain B: R.61, R.65, K.68, W.86 Ligands: EDO.20 Ligand excluded by PLIP EDO.20: 2 residues within 4Å: Chain B: R.65 Ligands: EDO.19 Ligand excluded by PLIP EDO.21: 4 residues within 4Å: Chain B: W.86, T.87, D.88 Ligands: EDO.22 Ligand excluded by PLIP EDO.22: 4 residues within 4Å: Chain B: W.86, T.87, A.113 Ligands: EDO.21 Ligand excluded by PLIP EDO.23: 3 residues within 4Å: Chain B: H.122, R.146 Ligands: SO4.14 Ligand excluded by PLIP EDO.24: 4 residues within 4Å: Chain B: D.60, W.63, W.95, G.96 Ligand excluded by PLIP EDO.25: 7 residues within 4Å: Chain B: V.33, T.55, T.117, F.120, R.121, P.123 Ligands: EDO.18 Ligand excluded by PLIP EDO.26: 3 residues within 4Å: Chain B: R.61, A.62, R.65 Ligand excluded by PLIP EDO.27: 2 residues within 4Å: Chain B: R.158, R.176 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of methyltransferase-like protein of unknown function (YP_167254.1) from Silicibacter pomeroyi DSS-3 at 1.80 A resolution. To be published

Release Date

2008-05-06

Peptides

Methyltransferase-like protein of unknown function: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Methyltransferase-like protein of unknown function

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